Pseudoalteromonas sp. Xi13: EJ103_15320
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Entry
EJ103_15320 CDS
T10490
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Pathway
pxsi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EJ103_15320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxsi03021
]
EJ103_15320
03400 DNA repair and recombination proteins [BR:
pxsi03400
]
EJ103_15320
Enzymes [BR:
pxsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EJ103_15320
Transcription machinery [BR:
pxsi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EJ103_15320
DNA repair and recombination proteins [BR:
pxsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EJ103_15320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AZN34014
LinkDB
All DBs
Position
1:complement(3401923..3402909)
Genome browser
AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVDIDAINPTRSKVVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVTLEGKDEVFLTLTKSGVGPVTAADIQHDGD
VTIANPDHVICHLTTDSSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLDAFVDLRDVTEP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttctaaaaccaaggttagtcgatatcgacgctatcaac
ccaacgcgttctaaagtagttttagaaccactagagcgtggctttggccatactctgggt
aatgccttacgccgtatactgttatcatctatgcctggatgtgcagtaactgaagttgaa
atcgacggtgtattgcatgagtacagcgcgaaagaaggcgtacaagaagacatcattgaa
atactactaaacctaaaaggtctagcagtaacgttagaaggcaaagatgaagtttttctg
accctgactaaatctggtgtaggccctgtgactgcggctgatattcagcacgatggcgat
gtaacaattgctaatccagatcacgttatttgtcatttaacgacagatagcagcgagatc
agcatgcgtattcgtgttgagcgtggtcgtggttatgtgccggcatctagtcgtttatcc
tctgatgacgatgagcgtccaattggtcgattgctgcttgatgcatcattcagcccagtt
gaacgtattgcgtactcggttgaatcagcccgtgttgagcaacgtacagacttagacaag
ttaatcattgatatggaaacaaacggcactttagatcctgaagaagcgatccgccgtgcg
tctactatcttagctgagcaattagatgcattcgtagatttacgtgatgtaactgagcca
gaagagaaagaagagaagccagaattcgatcctattctacttcgtccagttgatgatctt
gaactaacagtacgttcagcaaactgtttgaaagccgagcaaattcaatatatcggtgat
ttagttcagcgcactgaagttgagcttcttaaaacgcctaacctaggcaagaagtctcta
actgaaataaaagacgtgctagcttcacgtggtctttctctaggcatgcgcctagaaaat
tggccgcctgcaagcctagctgaataa
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