Pseudoalteromonas sp. Xi13: EJ103_17260
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Entry
EJ103_17260 CDS
T10490
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Pathway
pxsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ103_17260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxsi03019
]
EJ103_17260
Enzymes [BR:
pxsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJ103_17260
Messenger RNA biogenesis [BR:
pxsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJ103_17260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
AAA_19
AAA_22
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZN34461
LinkDB
All DBs
Position
2:complement(171615..172916)
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AA seq
433 aa
AA seq
DB search
MNFKSFSFSPELIQALDELNYHTLTPIQRSAIPAVRKGKDVLASAQTGTGKTAAFALPII
QKLTESELSTSNAPHALVLAPTRELAEQIANNFKAYAKHTALKVVSLFGGVNTAGQANAL
KDGVDVVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQSVIKSCDEQRQ
ILLFSATFPAAIKQFAAKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIGK
KNWQQVLVFVNMKETADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVLVAT
EVAARGIDIEGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENTLFEIES
LIGQKIKRVYLEGYEVSSREVLIDKIGKKPAHLRRSRTNKPTGQATGEARAVNRSRISNV
RKSLKGAKLTLKK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaatcttttagtttttcccctgaacttattcaggcgttagacgaacttaat
taccacacccttacgcccattcagcgttcagctattccggctgttcgtaaaggtaaagac
gttttagcaagtgcccaaacaggcacaggtaaaacggctgcgtttgctttacctatcatc
caaaaattaactgaatctgagctaagcacaagcaatgctccgcacgcgttagtgcttgcg
ccaactcgtgagctggcagagcaaatagcaaataactttaaagcctatgcaaaacatacc
gctttaaaagtagtgagcctatttggcggtgttaataccgcaggccaagcaaatgcactt
aaagacggcgtagatgttgtagttgcaactccagggcgtttacttgatcatattcgttta
ggtaatttaagcctagcaagtgttaaacacttagtacttgatgaagccgaccgtatgctt
gatatgggctttattgaagatatgcaaagtgttattaaaagttgtgacgagcagcgccaa
attttacttttctcagccacttttccagcggctattaagcagtttgcagcaaaagtatta
aaacagcctgaaattgttcgcgtagatcaaactaatagtactgcaagtacggtacagcat
gttgtgtaccctgttgaagagcgtcgtaagcaagagctgctttctgagctgattggtaaa
aagaactggcaacaggtacttgtgtttgtaaacatgaaagaaacggcggatgagctggtt
aaagagcttaaccttgatggtattcctgccactgtatgtcatggtgataaatcgcaaggt
aaccgccgccgtgcacttcgtgaatttaaagaaggcaaagtacgtgttttagtggctacc
gaagttgcagcgcgtggtattgatattgaaggcctaccacgagtaattaatattgattta
ccatggcttgcagaagattacgtacaccgcattggccgtacaggtcgtgctggtaatcaa
ggccaagcaatttcgtttgtaagccgcgaagaagaaaacaccttgtttgaaatagagtcg
ttaattggccaaaaaatcaaacgtgtttacttagagggttatgaagtaagtagccgtgaa
gtacttattgataaaataggtaaaaaaccagcgcatttacgccgtagccgtactaataag
ccaacaggccaagcaacaggcgaagcacgtgcggtaaatcgctcacgtatttcaaatgtg
cgtaaaagcttaaaaggcgccaagcttacccttaaaaagtaa
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