Papilio xuthus (Asian swallowtail): 106120729
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Entry
106120729 CDS
T07456
Name
(RefSeq) uncharacterized protein LOC106120729 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pxu
Papilio xuthus (Asian swallowtail)
Pathway
pxu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pxu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106120729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxu03021
]
106120729
03019 Messenger RNA biogenesis [BR:
pxu03019
]
106120729
Transcription machinery [BR:
pxu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106120729
Messenger RNA biogenesis [BR:
pxu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106120729
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
zf_UBZ
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
106120729
NCBI-ProteinID:
XP_013171578
UniProt:
A0AAJ6ZFT1
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MAKEIAEEYASSLADLTVNSKPLINMLTILAEENIDHAGVIVDTVEKHLEKVHPDIKLPV
LYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVDEKIRSQMFKLRETWHDVFPATKLYQ
LDVKVNLIDPAWPIQAQPQQSNIHVNPNFLKKNAAAAPTTSAAATATLTEDEEKMRTILA
KKEQELLMLQRKKIEMELEKTRRQLELAEKNAKLVGPSNVSAMPVAVVNPAPVVTAAPAA
TPAPPVSVKQRLGPPVNKPAGGRIAPVSGALVTARRDPRLARRPPPPQPAPLVPPVSQVS
HVPLVPHVPLVPNGPPIAPNVFDIKPLDRVTKRKNVITIDVRLDAAKDQRRRDPRLSDRA
RERRAKKTDEERERKREELRQEKDKARDNAAYNNIRTAVDDYMDRLQISDPKKINKLPPI
PKINRDENKDDDEPAPTKKRKENPKERRKKKEQNSSKESSSSSSPEKRLKSKETKKKAKA
KLEVEEAAPVVAETVAFKVLKNFNKDNYMCRNKKKSESPERESEEKSEDAKANSEPTNML
DVVMETKDVDLRVLQPVLEASAAAVAQKRPSTETVEGKPKKNKLDKFDILFGNEDVDLRQ
LPQVDELVPPPPPTITESPKVDISLDDAEDDGPISTSSPKQKDWHEVKEKKDETKKTPSK
LDLVRAKLAEATKGKDRLGRPLLFSKSPKARVNDLYKSLHNVFIHTLTGIERERRRTLSS
DDGDHKSDSGDDFTPEDHKKTISIIMSQAKEQFSDGKLDKNQYNTLMYQVLQLNEKLKLK
EAKQRESLELSKRKLKAHIDEENHKVPSPKTSPSDLNNFGDIDERVAPSAYLDTPPDSQN
FMQDSDMRMNPIGSDAADGKAQGLLPLPPMMPMYMGPYPMWRGQARPRMEEFGPRRFRGP
MPPFFRGKFDKRAQPRLPFDPRLPLPLPTPKLGMCQGESPLQPYERAESPPPIGTPGHTV
PPTNVQILEYIDQDPVKTIQIDGVPREIRFYGETAVIMLDWDDPREIKFLPGCRRVTFDN
KDSVILNFNEGYKQVEIDDQVFDIRFGAPTRELYINGRWYECFFGGQPLGVLIDGKPRLL
HLEGPLPQVDIGKKKRTDLVAGKINLIINATQMCPVYLDAKVQKIMINGQFFTLRFVDAL
RTVLINEKPFKVEFGDLPRPIFIGKEKFFVRFSALPRHIKPGQIEIADMEGVSVPASLPA
PAPDSPTRIDKDSEEADEEPIARPKKSPSPDGENQGLDMLASLMPSSMAPASGSEYSVAE
PMFSKTDKIPGLETPAEEKPAPLPILGNININDLFAKLVATGIVQVAKDTKEDIKTDEMI
PKQDKNIIRQVDLLKPETLKIKQPALVTRLYGGMQCSGCGARFPPEHTVRYSQHLDWHFR
QNRRERDSARRAHSRAWHYDLPDWLRYEELEELDEREKNWFETNAPAAESGSGGEVAVEA
PSAAAGAPAAQHCALCGDLFLQFYNEDREEWHLRNAVRHNDLHYHPLCLADYKASLAKEE
PEEESEEASGEVEKTEPIEVDTEEVKLASDDESDVEVLEVKEPVVEALEIEEGSCSESED
DDVVLKAEPVEQVVLEDADTDDETNEARRQRDIAAADFANVRVKQEPIDPDDEPVITVDE
DRLPTAIETTHTTVTSSIDGNVQLETPTAVIPIGGIRINITKTIPAAVTQEPSLEDVCTD
DEPLPPGEEPELEYKLKPNLEGVQFSRQPPVHKGNELSGLCSIM
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggaaatcgcagaggagtatgcatcgagcctggcagatcttaccgtcaacagc
aaacctcttataaatatgctaacaatattagcagaagaaaacatcgaccatgccggggtt
atcgttgataccgtggagaaacatttggagaaggttcatccagacatcaagctgccagta
ctgtatttagttgattctatcatcaagaatgttggtggggcatacacacagaagttttca
cagagcatcgtaaatatgttcacacggacattcaaacaggttgatgaaaaaataaggtct
cagatgttcaaactgcgggagacatggcacgatgtgttcccagccacaaagctgtatcag
ttggatgtgaaagtgaacctgattgacccagcatggcctatccaagcgcagccgcaacag
tctaacatccatgtaaatccaaattttctgaaaaagaatgctgccgctgcacccacaacc
agtgctgcagctacagcaaccctgacagaagatgaagagaagatgcgcaccatcctcgct
aagaaggaacaggagcttctcatgctgcaaagaaagaagattgaaatggagctggagaaa
actcgacggcagctcgagttggcagagaaaaatgctaaattggtgggtccgagcaatgtg
tcggcgatgccagtggcagtagtgaaccccgcgcccgtcgtgactgcagcacccgccgcg
acccccgcaccacccgtctctgtcaaacagcggttgggaccgccagtgaacaagccggcg
ggaggccgcattgcgcccgtcagcggagccctcgtcaccgcgcgccgcgacccgcgcctc
gcacgtcgccctccgccaccgcagcccgcgcccctcgtgccccccgtgtcacaagtgtct
cacgtgcccctagtgccccacgtgcccctcgtacccaacggcccacccatagcgcccaac
gtgttcgacataaagcccctcgacagggtcaccaaacgcaagaacgtcatcacgatcgac
gtgcgtcttgacgcggccaaagaccagcgccgtcgagaccccagactgtccgaccgcgcg
cgagagagacgcgccaagaagaccgacgaggagcgagagagaaagcgcgaggagctccgc
caggagaaagacaaggcgcgcgataacgccgcatacaataacatccgcaccgccgtcgac
gactacatggatcgactgcaaatatccgatccgaaaaagatcaacaaactcccgcccatc
cctaaaataaacagggatgaaaataaagacgacgacgaacccgcgccgaccaaaaagaga
aaggagaatcctaaagagaggcggaagaagaaggaacagaactctagcaaggagagttcc
agcagctcctcgccggagaagcgcctgaagtcgaaagagactaagaagaaagctaaagcg
aagctagaagtggaggaggcggcccctgtcgtggcagaaacggtggcattcaaagtgcta
aagaatttcaacaaggacaactacatgtgccggaataaaaagaaatccgagagtccggag
cgcgagtcagaagaaaagtcggaagacgcgaaagctaatagtgaaccaacaaatatgctc
gacgttgtcatggagacaaaggacgttgaccttagggtcctgcagccggtgctagaagcc
agtgctgctgcggtcgcgcagaagagaccctccactgaaacagttgaagggaaacctaag
aagaataaactagataaatttgatatcttatttggcaacgaagatgtggatcttcgtcaa
ttaccacaagtagacgagttggtgcctccccctccgcccaccattaccgagtctcctaaa
gtagacatttccctcgatgacgccgaggatgacggcccaatctccaccagctctcccaaa
cagaaagactggcacgaggttaaggagaagaaagatgaaacaaagaaaactccttctaaa
ctggacctcgttagagcaaagctagctgaagctacgaaaggaaaagaccgattaggtcga
cctctactgttcagcaaatcgccaaaagccagagtgaatgacctgtataaaagtttacac
aatgtctttattcacacactaacaggtattgagagggagaggcggcgcacgctcagctcc
gacgatggggaccacaagtccgacagcggggacgattttacgcccgaagaccacaagaag
accatatcgattatcatgtcccaggcgaaggaacagttcagcgacggcaaactggacaag
aaccagtacaacactctgatgtaccaagtgctgcagctcaacgagaagctcaagttaaaa
gaggccaagcagagggagtcgctcgaactgtccaagcggaagctgaaagcgcacatcgac
gaagaaaaccacaaggtccccagtcccaagacctcgccctcggatttgaataacttcggc
gacatagatgagagagtcgctccctccgcgtacctcgacactccgcccgacagccagaat
ttcatgcaggattccgatatgagaatgaacccgataggatccgacgcggccgacggcaag
gcgcagggccttctacccctgccccccatgatgcccatgtacatgggcccctacccaatg
tggcggggacaggcgagaccgcgcatggaagaattcggaccccgaagatttagaggtccg
atgccaccgttctttaggggcaaattcgataagagggcgcaaccgaggctacctttcgat
cctcgcctaccgctgccgttgcctacgcccaagctgggaatgtgtcagggcgagagcccg
ctgcaaccctacgaacgagcggagtcgccgccacccatcggcacgccaggacacaccgtc
ccgccgactaacgttcaaatcctcgaatacatcgaccaagatccagtcaagactattcag
attgacggagtgcccagagagatcagattttacggggaaaccgcagtcattatgttggac
tgggacgacccgcgcgagatcaagttcctgccgggctgcaggcgggtgacgttcgacaac
aaggactccgtgatcctaaacttcaacgagggttacaagcaggtggagattgacgatcaa
gtgttcgacattagattcggtgcacctacaagggagctgtacatcaatgggagatggtac
gagtgcttcttcggtggacagccgctgggcgtgctcatagacggcaagccgagactgttg
cacttggagggaccgcttccacaagtcgatatcggtaaaaagaagcgaactgatctggtg
gctggaaaaataaacctgattataaacgcgactcagatgtgtcccgtgtacctggacgct
aaagtacaaaagataatgataaacggtcagtttttcacgctgcgcttcgttgatgccctg
aggacagttttgatcaatgagaaaccttttaaagtcgagttcggagatcttccgagacca
atatttataggaaaggagaagttctttgtgagattctccgcactgccgcgtcatatcaag
ccgggacagattgaaatcgcagacatggaaggcgtgtcggtgcccgccagcttgcccgca
ccggcgcccgacagcccgaccagaatcgataaagattctgaggaagcagacgaggaacca
atagccagacctaagaaatcaccaagtcccgacggggagaaccaaggtctggacatgtta
gcaagtttaatgccatccagcatggcaccagcatcagggtcggagtacagcgtcgccgag
ccgatgttcagcaagactgacaagatcccgggtctggagactcccgctgaagagaaacca
gctccactgcccatacttggcaatatcaatataaacgatctattcgctaagctagtcgct
accggcatagtacaagtcgctaaagataccaaagaagatattaaaactgatgaaatgata
cctaaacaagataagaatatcatacgtcaagtggatctacttaaaccggaaacgttgaaa
atcaagcagccggcgctggtgacgcggctgtacggcggcatgcagtgcagcgggtgcggc
gcgcgcttcccgccggagcacacggtgcgctactcgcagcacctcgactggcacttccgt
cagaaccgccgcgagcgcgactccgcgcgccgggctcactcgcgcgcctggcactacgac
ctgcccgactggctgcgatatgaggagctggaggaactcgacgagagagaaaagaactgg
ttcgagacgaacgcgccggcagcggagagcgggtctggaggcgaggtggcggtggaggcg
ccgagcgcggcggccggagcacccgcggcgcagcactgcgcactctgcggagacctcttc
ctgcagttctacaacgaggaccgtgaggagtggcatctcaggaacgccgtgcgacataat
gacctgcattatcatccgctctgtctcgctgactacaaagcgtctctggctaaagaagag
ccagaggaagaatcagaagaggctagtggagaggtagaaaagacggagccgatagaggta
gacacagaggaggtgaagctggcctccgatgacgagtctgatgtggaagtcctcgaggtc
aaggagcccgtagttgaagctctagagatagaagaaggttcgtgctccgagtctgaggac
gacgatgtggtgctgaaggcggagccggtggagcaggtggtgctggaggacgcggacacg
gatgacgagaccaacgaggcgcggcgtcagcgcgacatcgccgctgcagactttgccaac
gtgcgcgttaagcaggaacctatagaccccgatgatgaaccagtaataacagtggacgag
gatcgtctccccaccgccatagagactacgcacaccactgtcacgtcctccatcgacggc
aacgtacaactggagacaccgaccgctgtcatacccatcggaggcatcagaattaacatc
accaagacaataccagccgctgtcacccaggagccctccctggaggatgtctgcactgat
gatgaacccctacctcccggtgaggaaccggagcttgagtacaagttgaaacctaaccta
gaaggtgttcagttcagtagacaaccaccggtgcacaaaggtaatgaattatcaggactt
tgttctattatgtga
DBGET
integrated database retrieval system
