Papilio xuthus (Asian swallowtail): 106122640
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Entry
106122640 CDS
T07456
Name
(RefSeq) fibril-forming collagen alpha chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pxu
Papilio xuthus (Asian swallowtail)
Pathway
pxu04512
ECM-receptor interaction
pxu04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pxu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106122640
04518 Integrin signaling
106122640
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pxu00536
]
106122640
Glycosaminoglycan binding proteins [BR:
pxu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106122640
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
NELL_VWC_C
Motif
Other DBs
NCBI-GeneID:
106122640
NCBI-ProteinID:
XP_013174186
LinkDB
All DBs
Position
Unknown
AA seq
1495 aa
AA seq
DB search
MSWWVTAACVALLVLQVASKDLAEASRDDLDLPQAQESDLVSYDDYNPFGEDENAIIAER
DFTSQSTTSTSVPRRPPVTRVPPPNRCVDSGRTYLEGETWKRDNCTLCQCHLARMNCSVI
PACLMPPATSRPIYNAGAQPTSPVRGVQGPPGDDGPSGPPGAPGIGGVPGAPGSPGPVGP
MPDVNAYLAQLAATAGGDKGPAFDPYQYMQAPVGAPGIRGIPGPQGPPGPQGFQGPRGEP
GEPGLPGPLGPPGERGPPGLPGKDGSPGEDGEPGPAGAIGQTGPRGAPGVPGIQGLKGHR
GFDGKDGAKGEQGFPGEKGPTGLPGQMGPTGPVGPVGPRGERGREGPPGPPGMRGVDGAP
GPPGLVGNVGKPGSPGFPGAPGIKGEQGLVGPKGSQGLQGPRGEAGRPGQPGEIGAPGLA
GRDGTPGEKGVQGQTGPSGPQGFPGPRGTPGIAGDPGIPGTKGMPGQPGERGAKGETGIR
GETGAQGPRGLPGSLGPEGKRGKRGLRGPAGSIGPQGDRGLPGMRGLPGLDGPIGQKGQP
GERGGVGLPGPKGSTGDAGRPGPQGLQGQRGLVGRPGMAGKSGPPGERGIPGADGRPGEQ
GLQGLQGPPGLMGSPGERGLQGEPGKDGEPGQQGQQGPKGDGGRDGSPGIQGPQGTSGPA
GERGPQGPPGPTGFPGMPGAAGLPGSPGKEGEPGIAGPAGPPGSSGPRGERGFTGERGLP
GQPGTPGEKGETGSQGADGPPGPEGLKGSKGHPGQLGAMGLPGPRGMSGLPGEKGERGAA
GPQGNDGPPGRQGEQGPQGPVGPQGHPGEPAERGEPGTPGVPGEPGAPGSQGERGQPGLQ
GSPGLSGPPGLTGMPGLKGDRGYMGAKGQQGSPGNPGIPGETGQRGLAGLPGAKGSRGEQ
GLKGDIGRAGLPGRPGELGPQGPQGSPGQAGPPGIPGAKGAAGDPGRPGQLGPIGLTGAP
GPEGPKGERGSEGEIGPQGPVGPSGPAGERGPSGLPGMSGPPGPQGQRGPQGENGAPGKP
GSDGAPGPVGPTGSQGPPGPMGEPGPEGRPGKLGQPGIPGRPGDKGPMGQPGASGPAGPP
GMQGPPGQSGPPGQAGERGLRGEAGPPGVDGPQGPSGKQGPPGLDGSKGERGEAGADGAK
GHAGLPGLPGMVGAPGRQGERGLPGPIGPPGKDGDVGPRGTPGRDGSPGPQGPMGPAGGR
GPPGESGRHGAPGPAGPPGPPGLPGEGLAYDAAAIAAMLQQGSVKGPDPLGDDPNSLPPR
FFKEDMSPAERKKIVMKAYEQLKVSLNKFLKPDGTKEAPAKTCGDIKYHYPEFESGQYWI
DPNGGEMNDAILVHCDMSIGASCVFPKPMQSQDIVYKGKDHEAWLSEMEDGFTISYKAEH
SQLTYLQLMSSRAVQNVTLHCVNTIGYYDPTTHNYRHGLKFLAYNDAEILPKANNRLRYK
ALLDNCQYKKQEWAETVLQYETDKPGRLPLLDVAVRDVGRRNQKFRIELGLACFS
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtggtgggtgacggcggcgtgcgtagcgctgctggtgctgcaggtggccagcaaa
gacctggcggaggcctcgcgcgacgacctcgacctgccgcaagcacaagagtctgacctc
gtcagttacgatgactacaatcccttcggagaggatgagaatgctattattgccgaacgt
gactttacatcacaatcaacaaccagtacttctgtaccccgaagaccacctgtaaccaga
gttccgcctccgaatcgctgcgtggactctggccggacgtacctcgagggcgagacgtgg
aagcgagataactgcacgctctgtcagtgccatctcgcacgcatgaactgctccgtcata
cccgcctgtctgatgccgcctgcgaccagtagacccatatacaacgctggcgcccaaccg
acatcaccagtaagaggtgtgcaaggacccccgggagatgatggtccctcaggaccaccc
ggtgcaccgggtatcggcggcgtgccgggagcaccgggctcacctggacctgtaggacct
atgcctgatgtaaatgcttatctcgcacaactggcggcaacagcgggtggcgataaagga
cctgcctttgacccttaccagtacatgcaagcgccagtgggcgctcctggtataagagga
attccaggccctcaaggtcctcccggacctcaaggtttccaaggtcctcgcggtgagcct
ggagagccgggtctaccaggaccactagggccacctggagaaagaggacctccgggtctt
cctggcaaggatggatctccgggtgaagatggtgagcctggtcccgccggagcgatagga
caaacaggaccaagaggagccccaggcgttccaggaatacagggtttgaaaggtcatcgt
ggatttgacggcaaggatggcgcgaaaggcgagcaaggttttcctggagaaaaggggcct
accggtcttccagggcaaatggggccgacggggccagtgggtcctgttggtccccgtggg
gagcgaggccgagaaggtcctccgggtccaccgggcatgcgaggtgttgatggcgcaccg
ggcccgcctggattagtgggtaacgttggtaaaccaggctcgccgggttttccaggagct
ccaggaataaagggcgaacaaggactagttggacccaaaggaagtcaaggtctccaaggg
ccccgtggagaagctggacgtccgggtcaacctggtgagatcggagcccctggtctagcc
ggacgagacggtacaccgggtgagaaaggtgttcaaggtcaaactggaccctcgggcccg
caaggttttcccggacctagaggaacacctggtatagcaggcgatccagggatccctggt
actaaaggaatgccgggacaaccaggagagagaggggctaagggggaaactggtattaga
ggagaaacaggcgcccaaggtccgcgtggtttacctggctctttagggcctgaaggaaaa
cggggaaaaagaggtctacgtggcccagctggaagtatcggcccacaaggagaccgtgga
ttaccaggaatgagaggtctccccggtctcgatgggcctattggacaaaaaggccagcca
ggtgaacgaggaggcgtaggtttacctggaccaaaagggagcacgggtgacgctggaaga
cctggacctcaaggtttacaagggcaaagaggcctagttggaagacctggaatggctgga
aaatctggcccgcctggagaaagaggaattcccggtgctgatggaaggcccggagaacaa
ggacttcaaggtttacaaggcccaccgggattgatgggcagtccaggggaaagaggttta
caaggtgaacctggtaaagacggcgaaccgggacaacaaggtcagcaaggaccaaaaggc
gatggtggtcgagatggtagtccgggaattcaaggaccacaaggtactagtggaccagcc
ggggaaagaggacctcaaggaccacctggcccgactggctttccgggaatgccaggagct
gccggtttacctggatctccaggaaaagaaggtgagcccggaatcgccgggccggcagga
cctccggggtcatcaggtccgcgaggagaacgagggttcactggagaacgaggactccct
ggtcagcctggcacacccggagaaaagggagagacaggctcacaaggagcagacggccca
ccgggaccagaggggcttaaaggcagcaaaggtcatcctggacagctcggcgcaatggga
cttcctggtcctcgtggtatgtctggtttgcctggcgagaagggcgaaagaggcgccgct
ggaccacaagggaatgatgggccgccaggacggcagggagagcaagggcctcaagggcct
gtcggtccacaagggcatccaggtgaaccagctgaaagaggtgaacctggtaccccggga
gtacctggagaacccggtgcgccgggatcgcagggtgaaaggggtcagccaggattacaa
ggatctccgggactatctggaccacctggtttgacgggcatgccaggtttaaaaggcgat
agaggttacatgggtgcaaaagggcaacaagggtcgcctggtaacccaggtatccccggt
gagaccggacaaagaggtctagctggtctacccggcgctaagggatcccgaggagaacag
ggactgaagggagacattggtcgcgctggtctaccaggaagaccaggtgaattaggacca
cagggtccccaaggaagtcctggccaagccggacctcctggtattccaggagccaaaggt
gctgcaggagatcctggtagacctggccagttgggacctatcggtttaactggtgcgccg
ggccctgaaggtcctaagggtgagagaggaagcgaaggtgagatcggaccgcaagggcct
gttggaccatctggaccggctggcgaaaggggaccgagtggtttgcctggcatgtctgga
ccaccgggaccacaagggcaacgaggaccacaaggtgaaaacggagcgccaggcaaaccg
ggttcagacggagcaccgggaccagtgggacccactggctcacagggtcccccaggacca
atgggagaaccaggaccagaaggaagaccgggtaaacttgggcagcctggaatacccgga
agaccaggagataaaggaccgatgggtcaaccgggagcatcgggacccgcagggccgccg
ggaatgcagggtccacctgggcaatcaggacctccaggacaggcaggcgagcgtggtctt
cgtggtgaggcgggaccacctggagttgatggtcctcaaggtccgtccgggaaacaaggg
cctccagggctggatgggagcaaaggagagcgcggggaggctggagcagacggcgctaaa
ggacacgctggattaccgggacttcctggcatggtaggagcacctggcagacagggggag
aggggtttgcctggaccaattggtcctccaggaaaagatggagatgtgggaccaagagga
acacctggacgtgatggtagtccaggtcctcaaggaccaatgggaccagctggagggcgg
ggacctcccggagaatcgggtaggcacggggcgccgggtccggctggaccgcccgggccc
ccaggtttgcctggtgagggcttggcctacgacgctgctgctattgctgctatgcttcaa
cagggttcagtcaaaggtcctgatccattgggagatgatccaaatagcttgccgccgcgg
ttcttcaaagaagatatgtcgcctgcggagcgcaagaagatagtgatgaaagcctacgaa
cagctcaaagtatctctcaacaaattcctcaaacctgacggcactaaggaagcaccggcg
aaaacttgtggcgatattaaatatcactatccagaatttgagagcggacaatattggatc
gatccgaatggcggcgaaatgaacgacgccatattagtccactgtgacatgtctattggt
gccagttgcgtgttcccgaagccgatgcaatcccaggacattgtgtacaaaggtaaagac
cacgaggcgtggctcagtgagatggaagatggatttacgatatcctacaaagcggagcac
agccaattgacatacctccagctgatgtcatcgcgcgctgttcagaacgtgacactgcat
tgcgttaatacaataggatactacgatcctacaacacataactatagacacgggctcaag
tttcttgcctacaacgacgccgagatcctacccaaagccaacaacaggcttagatacaaa
gctttgctggataactgtcagtacaagaaacaagaatgggcagagactgttctacagtat
gaaactgacaagcctggacgtctgccactcctggatgtagctgtcagagacgttggcaga
aggaatcagaagttccgcattgaactcggtttggcttgcttcagttaa
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integrated database retrieval system
