Papilio xuthus (Asian swallowtail): 106124381
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Entry
106124381 CDS
T07456
Name
(RefSeq) DNA-directed RNA polymerase II subunit rpb1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pxu
Papilio xuthus (Asian swallowtail)
Pathway
pxu03020
RNA polymerase
pxu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106124381
09124 Replication and repair
03420 Nucleotide excision repair
106124381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxu03021
]
106124381
03400 DNA repair and recombination proteins [BR:
pxu03400
]
106124381
Enzymes [BR:
pxu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106124381
Transcription machinery [BR:
pxu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106124381
DNA repair and recombination proteins [BR:
pxu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106124381
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
106124381
NCBI-ProteinID:
XP_013176451
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MATTNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRNARCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVNPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELMRNEQLGAAAHVLAENIRLL
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMIRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDPSNERYLKRIFNEDIIKELTESGYVISDLESEWEQLSKDREILRQIF
PSGESKVVLPCNFKRMIWNVQKIFHINKRMPTDLSPIKVIQGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEEYRLSSEAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGAGMYFGVGTPSMT
PLMTPWSTQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSAWSSQPGSP
GSPGPPLSPYASPAGASPSYSPTSPVYSGASPIQSNPTSPHYSPTSPSYSPTSPHYSPTS
PIYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPGYSPTSPGYSPSSPSYSPTSPVYSPTSPSYSPSSPNYTPNCP
AYSPSSPSYSPTSPAYLPSSPKYSPSSPQYSPTSQNYSPTSPSLAGGSPTYSPTSPQYSP
TSHHYSPTSPAYSHSSPQHQSSTPYSPSSPNYSPSSPNYSPSSPGYSPSSTKYSPTSTTY
TPTSPNYSPTSRVHSPASGGGTTTYSPTSPTYSPNSPSYDAGDD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggccaccacgaacgattcgaaggcgcctttgcgccaagttaaaagagtacaatttggt
atattatcaccagatgaaatccgacgtatgtccgtcaccgaagggggcattcgctttccc
gaaactatggaaggcggaaggccgaagcttggcggacttatggatccacgacagggggtg
attgacaggaatgccaggtgtcaaacctgtgctggaaatatgaccgagtgtcctggtcac
ttcggacatatcgatttagctaaaccagtatttcacattggtttcattacaaagactata
aaaatcttgcgatgtgtttgtttctactgctcaaaactgcttgttaacccgacaaatcca
aagataaaagaagtagttatgaaatcaaagggacagccacgtaagagattgacatatgtg
tacgacctttgcaaaggtaaaaatatttgcgagggtggtgaagacatggatattggcaaa
gaaggtgaagaaggtaaaagagggtctggacatggaggttgtggtcactaccaaccatct
attagacgtcaaggcttagatctaactgctgaatggaaacatgcaaatgaagatacacaa
gaaaagaaaataataataacagcggagagagtgtgggagatactcaaacacatcacagat
gaggaatcatttatattggggatggatcccaaatttgccagaccggactggatgattgtg
acagttttgcctgtaccaccattgtcagtgagaccagctgttgtcatgtttggtgctgca
aaaaatcaagatgacttgactcataaacttgctgacattattaaggcaaataatgaattg
atgaggaatgaacagctgggtgctgcagctcatgttcttgctgaaaacataagattgtta
caatttcatgtagccacatttgtagacaatgatatgccgggcatgcctaaagccatgcag
aaatctggaaaacctctaaaagcgatcaaagctcggctgaaaggaaaagaaggaagaata
agaggaaatcttatgggaaaacgtgtagatttttcagctcgtactgtcattacacctgat
ccaaatttacgtatcgatcaagttggtgtacctcggtcaatcgctcaaaatttaacattc
ccagagcttgtcaccccttttaatattgacagaatgcaagagttggttagaagaggaaat
gctcagtatcctggtgctaaatacatcgtacgcgataatggggaaagaattgatcttaga
ttccatccaaaaccttcggatctacatttgcagtatggatacaaagttgagcgacattta
cgagatgatgatttggttatattcaaccggcaacctaccctccacaagatgagtatgatg
ggtcacagggtgaaagtgctaccttggtcaacattccgtatgaatttgagttgtacatct
ccttacaatgctgattttgatggtgatgaaatgaatctacatgttccacagtctatggaa
actcgtgcagaagttgaaaatattcatatcacacctcgacaaattattacaccacaagca
aataaacctgttatgggtattgtacaagatacattaactgctgtcaggaaaatgacaaaa
cgagatgtgtttctcactaaagaacaagttatgaatctccttatgttcttacctacatgg
gatggtaagattccccagccatgtattttgaagccacaacctctgtggactggtaaacag
atatttactttaatcattccgggaaatgtaaatatgatacgaacacactcaacccatccc
gatgaagaagatgatggaccgtataaatggatatcaccaggtgatacaaaagttgttgtg
gaacatggtgaattgcttatgggtatcctttgtaagaaatcattgggtgcttcagcaggt
tctttgcttcacatttgtatgttggagttaggccatgaaactgctggccgattttatggt
aatattcagacggttatcaataattggttgttactggagggccattccatcggtattggt
gatactattgctgatccacaaacataccaagaaattcagcgtgccattgtaaaggccaaa
gatgatgtcatagaagttatacagaaagctcataatatggaactggagccaactccaggt
aacactttgagacagacctttgaaaatcaagtaaatcgtattctaaacgacgctcgtgac
aaaactggtggttcagctaagaagtctcttactgagtacaacaaccttaaggctatggta
gttgcaggttctaaaggttcaaatattaatatatctcaagttattgcttgtgtgggtcag
caaaacgttgaaggtaaacgtataccatttggcttcagaaagcgaacattgccacatttt
ataaaagacgattacggtcctgaatccagaggctttgtagaaaattcatatcttgccggc
ttgacaccatcggagttctattttcacgctatgggtggtcgtgaaggtcttattgatact
gctgtgaaaactgctgagactggatacattcaacgtcgtttgataaaggctatggagtcc
gtaatggtacattacgatggaacggtccgtaactctgtcgggcaattgattcagttacgt
tatggcgaggatggtctggctggagaaactgtagaattccagaacttacctactgtgaaa
ctgtccaacaaagcttttgaaaagaaattcaaatttgatccttccaatgagagatacctg
aaacgaattttcaacgaagatattattaaagagttgaccgagtccggatacgtaatatct
gatcttgaaagtgaatgggagcagttatcaaaggacagagaaatattgagacaaatcttc
cctagcggtgaatccaaggtcgtacttccttgtaatttcaagagaatgatatggaatgta
cagaagattttccatattaacaaacgaatgccaacggacttaagtcctatcaaggtcata
caaggagtgaaagatttgttgaagaaatgtgttattgtagcaggagaagatcgcttatct
aagcaggccaatgagaatgctacacttctgttccaatgtttagtaagatcaacattgtgt
acgaaatttgtatcggaagaataccgtttgtccagtgaagctttcgaatggcttattgga
gaaatcgaaactcgtttccagcaggctcaagtaaatccaggagaaatggttggagcttta
gctgcacagtcactcggagaacctgccactcagatgacattgaacactttccactttgct
ggtgtatcatccaaaaacgtaacacttggtgtaccgcgattgaaggaaatcattaacata
tctaagaaaccaaaagcgccgtctcttaccgtatttctgacgggtggcgccgctcgagac
gctgaaaaagctaagaatgttctctgcagattggaacatacaactttacgaaaggttact
gcaaatacagcaatctactatgacccagatccacaaaatacagttattgctgaagatcaa
gaatttgttaatgtttactatgagatgcctgacttcgatcccactaagatatcgccttgg
ctcttgcgtattgaattagatcgcaagaggatgacggataagaaattgactatggaacag
attgcagaaaaaattaatgccggttttggagatgatttgaactgcatattcaacgacgat
aacgctgagaaacttgtacttcgtataagaattatgaataacgaagagagtaaattccaa
gataatgatgaagagactgttgacaaaatggaagatgacatgttccttcgttgtattgaa
gccaatatgttgtctgacatgacacttcaaggcattgaagctattgccaaggtatacatg
catttaccacagactgaagcgaaaaagcgaattattatcacggaacaaggtgaatttaag
gcaatcgctgaatggctactggaaactgatggtacatcacttatgaaagtcctttccgaa
agagacgttgatccgatacgaacattttctaacgacatttgtgaaattttccaagtgctt
ggtatcgaagctgtgcgaaaatcagtagaaaaggaaatgaatgccgtgttgcagttctac
ggtctatatgtaaactatcgccatcttgctttgctttgtgacgtgatgacagcaaagggt
cacctcatggctatcacccgtcacggcattaacagacaagacactggagccctaatgaga
tgttcattcgaagaaacagtggacgttttactagacgcagccagtcatgccgaagtggat
ccaatgagaggagtatcagaaaatataatcatgggacagttgcccagaatggggacagga
tgttttgacttactacttgatgcagaaaaatgtaaacatggaatggaaatgggaggtctt
ggcgtaggcatgggtgttggtgcaggaatgtactttggtgttggaacaccgtctatgaca
ccattaatgacaccatggtctactcagaacacaccagggtatggaagcagtgtatggtca
cccggtcaagttggcagtagtatgactcctggtggtccgtcgttctcgccatctggtgca
tcggacgcttctggtctctcaccagcttacagtgcctggtcttcacagccaggttcacca
ggatcacctggaccaccattgtcaccttatgcgtcccccgcgggagcttccccgtcttat
tctccgactagtccggtttactcaggagcttctcctatacaatctaatcctacatctccg
cattattcaccaaccagtccttcgtattccccgacttcgccacactattctccgacgtcg
ccaatttattctccaacttccccaagttattcgccaacatcgccaggttactcgccgaca
tcgccttcgtattcgccgacgtcacccagttattcccctacttcgccgagctattctccc
accagtccggcatattcacctacttctcccagctactctcccacttcgccgagttactcg
ccaacgagtccctcgtactcaccaacaagcccgtcctactcaccgacgagccctgggtat
tcgccgacgtctccaggatattcgccatcctctccaagctattcgcctaccagtccagtt
tatagtccaacgtcgccgagttattcgccatcatcgccaaattatacaccaaactgtccc
gcctattctccatcgagtccgtcatattctccgacatctccagcttatttaccatcttct
ccaaagtattcaccatcgtcgccacaatattcgccgacatcgcagaattattcgccgact
tccccgtctctcgctggaggaagtccaacatattctccgacaagcccacaatattctcca
acgagccatcattattcaccaaccagtccggcgtattcacattcgtctcctcagcaccag
tcaagtacaccttattccccgtcatcgcctaattattctccttcttcgcctaattactca
ccttcgtctccgggctattcgccgtcttctactaagtattcaccgacatcgacaacgtat
actccaacatctccaaactactcgccgacctcccgcgtgcactccccggcctcaggtggg
ggaaccactacctactccccaacttcacctacttattctcctaactctccatcgtatgat
gccggcgatgattaa
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integrated database retrieval system
