Pseudobutyrivibrio xylanivorans: FXF36_08055
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Entry
FXF36_08055 CDS
T06217
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pxv
Pseudobutyrivibrio xylanivorans
Brite
KEGG Orthology (KO) [BR:
pxv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pxv03009
]
FXF36_08055 (rlmD)
Enzymes [BR:
pxv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FXF36_08055 (rlmD)
Ribosome biogenesis [BR:
pxv03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FXF36_08055 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Methyltransf_15
Cons_hypoth95
PrmA
Methyltransf_11
Methyltransf_4
PCMT
Ubie_methyltran
Methyltransf_12
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
QFJ54808
UniProt:
A0A5P6VR28
LinkDB
All DBs
Position
1:complement(1761853..1763235)
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AA seq
460 aa
AA seq
DB search
MNKNDIVRLTIEDMSLEGAGIGHTDGVTIFVKDAVVGDVCDVIITKVKKTYCFAALKEVI
EPSKFRVEPACPNAKQCGGCQIMQVDYAKQLEIKDNIVANNLVKIGGYDRAFVDSVREPI
LGMIDPFRYRNKAQVPIGTDKDGNLIAGFYGARSHRIVPSSDCKICSKKSMDIVYTVIDY
MNENKVAAYDEATGKGLIRHVLVREGKATGETMVCVVVNGDKLPAVDSLVSHVKTVEPEL
ASLVLNINTRRDNVIMGYETKVLYGKEAIRDTITLTNGDTIAFDISANSFYQVNHDQMEK
LYSKALEYADLHGTEEVWDLYCGIGTISLSMAKHAGRVIGIEVVPQAIENAKANAKLNGL
DNAEFYCGEAEVVLPEIYEKMSHPDVIMVDPPRKGCDTVALDTMVKMQPSRIVYVSCDSA
TLARDLKYLEERGYHLQKYTVCDQFGHTMHTETVALLSKN
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaatgatattgtaagacttacaatcgaagatatgtcccttgagggcgcagga
attggtcacactgatggtgtgaccatttttgtcaaagatgcagttgttggagatgtttgt
gatgttattatcacaaaggtgaaaaagacatattgcttcgctgctctgaaggaagttatt
gaaccaagcaaattccgtgtggagccagcctgccctaatgcaaagcagtgtggcggttgt
cagattatgcaggtagactatgctaagcagctggagatcaaggacaatattgttgcgaat
aatctggtaaagattggcggttatgacagagcgtttgttgattcggttcgtgagccaatc
cttggaatgatagacccatttcgctatcgtaataaggcacaggttccaattgggacagat
aaagatggcaatctgattgcgggattttatggtgccagaagccataggattgttccatca
tctgattgcaaaatctgctctaaaaagagtatggatatcgtatatacggtaatagattac
atgaatgaaaataaggtagctgcctatgacgaggctacaggtaagggcttaattcgtcat
gtgctcgtccgagaaggcaaggccactggcgagacaatggtctgtgtagtggtgaatggt
gataagcttccggcagtggattcattagtatctcacgtgaaaaccgtggaacctgagttg
gcttcgttggtgctcaatatcaacacccgccgcgataatgtcattatgggatatgagacc
aaggtcctctacggcaaagaagctatccgcgatactatcactcttacaaatggtgatact
atcgcctttgatatcagcgcaaactccttctatcaggtcaatcacgaccagatggagaaa
ttgtatagcaaggcgcttgagtatgctgatttgcacggtacagaagaggtttgggatctt
tactgcggtatcggtactatttccctctctatggcaaagcacgcaggacgcgtgattgga
atcgaggttgttccacaggctatcgaaaacgctaaagcaaacgcaaagcttaatggcttg
gataatgctgagttctactgtggcgaagcagaggtagttcttccagaaatctacgagaag
atgtcccacccagatgtcataatggtggatccacctcgcaagggatgcgacacagttgcc
cttgataccatggtaaagatgcagccctctcgtattgtttatgtcagctgtgacagtgcc
acattggcccgcgacctcaagtatctagaggagcgtggctatcaccttcagaagtacact
gtgtgtgatcagtttggacacacaatgcatacggagacggttgcgttattgtccaagaat
tag
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