Pseudobutyrivibrio xylanivorans: FXF36_09205
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Entry
FXF36_09205 CDS
T06217
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pxv
Pseudobutyrivibrio xylanivorans
Pathway
pxv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FXF36_09205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxv03400
]
FXF36_09205 (mfd)
Enzymes [BR:
pxv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FXF36_09205 (mfd)
DNA repair and recombination proteins [BR:
pxv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FXF36_09205 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
nSTAND_NTPase5
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QFJ55027
UniProt:
A0A5P6VQZ6
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All DBs
Position
1:complement(2030973..2034497)
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AA seq
1174 aa
AA seq
DB search
MKAFLEPFESLTAVESLREALLKYGKIYDITGCADKAHLIYGIGHDVKYKLIVTSDELKA
RELYEEYRFFDNDVVYFPAKDFLFYQSDIRGNALTRERMQAIEAVISNSACTVITTIDAL
MNKLPALSYFEEGVVAVSDTDTVELEALRRKLVAMGYENVGTCEHPGEFAVRGGIIDVYP
LTAELPVRIELWGDEVDSIRSYDPTNQKSIENINSVLIFPAVELILSAEEIDAGLAKIEK
ERDLRYEAYRKEMKTEEAYHLKTYADRVIEETREWGLSQELETNLTYFCDKLGSFADFMP
KGTYVFIDEVQKVINKAEVTETEFADAMTRRVEAGYMLKGQMEMLYGVAEVFGKLERFPI
TLMSVLDAKNKLLKSADHFSIAVQGVNAYNGSFELLTKELLQYKKRKYKVLLVTSSATKG
QRLAEDLLDEGLNAYFTTDLDHRINPGETMICQGNIKRGFDYPDSAFVMLSDGDIFGHVR
KKKKRVKKYEGESISSFSDLHVGDYVVHENYGLGVYKGTEQMELDRVIRDYIKIEYAKGS
NLYVLTSQLDQIQKYSGPDGKKPKLNSLGAGTQEWARTKQKVQSAVGVVAKELVDLYALR
QNTDGFVYGPDTIWQKEFEESFPYEETEGQLSAIDAVKSDMQSTKIMDRLICGDVGFGKT
EVAMRAAFKAVQEGKQVAYLVPTTILAQQHYNNFVQRMGGYPVNIGLLCRFRSAAEQKKT
IQDLKNGMCDIVIGTHRLLSKDVEFKDLGLLIIDEEQRFGVNHKERIKQMKKTVDVLSLS
ATPIPRTLHMSLVGIRDMSVLDEAPMERTPIQTFVFEYNSEMVREAIVREMARDGQVYYV
FNRVRGIQDMAAEIEKLVPKSTVGYIHGQMTEAKVEDVMMQFINHEIDVLVATTIIEIGL
DISNVNTIIIHDSDNMGLSQLYQLRGRVGRSNRTAYAFLMYKQDKMLKEVAEKRLAAIKE
FTDLGSGFKIAMRDLEIRGAGNLLGVEQHGNMTAVGYDLYCKMLNEAVKKEKGEIKEDTF
NTSVDINIEAYLPDTYVSNEEQRIDIYKRIAAIDSEEARDDMLDELVDRFGEPKRCVQNL
LWVAMLRVKAHDAYVSAIEQKGDIIRIVMFEKAKIDVAQIPALLERNNPHITFAADPKNP
AFVFNTKANTRIKPNEVYEYLEDFLLDLKSLKVE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcatttttagagccatttgaatcacttacagcagtagagtctcttagagaggct
ctacttaaatatggaaagatatatgatattacagggtgcgctgataaggcgcaccttatt
tatggtattggtcatgatgtgaaatataaactgattgtcacaagtgatgagcttaaggca
cgagagctatacgaagagtaccgtttctttgacaatgatgttgtgtatttccctgcaaag
gatttcctgttttatcagtctgatataagaggaaatgctttgactcgtgagcgaatgcag
gcaattgaggcagttatcagcaacagtgcctgcacagttatcacaaccatagatgcgctg
atgaataagcttccagcactttcatattttgaggaaggtgtggttgccgtttcagatact
gatacggtggagctagaagctctgcgcaggaagcttgtggcaatgggctatgaaaatgtg
ggaacttgcgagcatccgggtgagtttgcagtgcgaggcggcattatagatgtatatcca
ctgacagctgaattaccagttcgaatagagctttggggtgatgaggtggacagcattcgc
tcctatgatccgacgaatcagaagtctatagaaaatataaattcagttttaatttttccg
gcagttgagcttatattaagtgctgaagagattgatgcaggtctggcaaaaatcgaaaag
gagcgagatctgcgctatgaggcatatagaaaggagatgaaaaccgaagaggcttatcat
ctcaaaacttatgctgacagggtaatcgaggagacaagagagtggggattaagtcaggag
cttgagaccaaccttacctatttttgtgataagctgggttcttttgctgattttatgcca
aagggcacctatgtatttattgatgaggttcaaaaggtaattaataaggcagaggtcaca
gagactgagttcgctgatgccatgacaagacgtgtagaggctggctatatgctgaagggg
cagatggaaatgctctatggcgtagcagaagtctttggaaagttggagagatttcctatt
acactgatgtccgtacttgatgccaagaataagctgcttaagtcggcagatcatttcagt
atagctgttcagggggtgaatgcgtataatggcagcttcgagcttttgaccaaggagctt
ctccagtataagaagcgtaaatataaggtacttttggtaacaagctctgcaacaaaggga
cagagacttgcagaggaccttttggatgagggcttgaatgcatatttcacgaccgatttg
gatcacaggattaatcctggtgagacaatgatatgccagggaaatattaaaagaggcttt
gattatcctgattctgcctttgtaatgctgtctgacggtgatatattcggtcatgtaaga
aagaagaaaaagcgtgtcaaaaagtatgagggtgagagtatatcttccttctcagattta
catgtcggagattatgtggttcatgagaattacggcttgggtgtctataagggtaccgag
cagatggagctagaccgtgtaattcgagattatattaagattgagtacgcaaagggcagt
aatctctatgtgcttactagtcagcttgatcagattcagaaatactcaggacctgatgga
aagaagccaaagctaaattccttgggggcaggaactcaggagtgggcaagaacaaaacag
aaggttcagtcggcagttggtgtagttgcaaaggagttagttgatttatatgccctccga
cagaacactgatggatttgtatatgggcctgacacaatatggcagaaggaattcgaagaa
agcttcccttatgaggaaacagaggggcaactttctgcaattgatgcggtaaaatcagac
atgcagtccactaagataatggatagacttatctgcggagatgttggatttggcaagact
gaggtggctatgagggctgcttttaaggctgttcaggagggaaaacaggtagcatatctg
gttccaaccaccatattagctcagcagcattacaataatttcgttcagagaatgggtggc
tatccagtaaatattggtcttttatgtcgttttagaagtgccgcagagcagaaaaagaca
atccaggatttgaaaaatggtatgtgtgatatcgtaatcggtactcacagattgctttca
aaagacgtggaattcaaggatttaggcctacttattatagatgaagagcagcgatttggt
gtaaatcataaggaacgtatcaagcagatgaagaagacagttgatgtcctttcgctatct
gctacccctattcctcgaactcttcatatgtcactggttggaatacgtgatatgagtgtg
ttggacgaggctccaatggagagaacccctattcaaacatttgtatttgaatacaactca
gagatggttagagaggcaattgtacgcgaaatggcacgtgatgggcaggtttattacgtg
tttaacagggtgcgtggtattcaggatatggcggcagagattgagaagttggttcccaaa
tcaactgttggctatattcatggccaaatgactgaggcaaaggttgaggatgtgatgatg
caattcatcaatcacgaaatcgatgttcttgtagcgacgactatcatagagattggactg
gacatttcaaatgttaatactattatcatccatgattcggataacatgggactttctcag
ctgtatcagctgaggggacgagttggccgaagcaacagaacagcctatgcttttcttatg
tataagcaggataaaatgcttaaggaggtggctgagaagcgcctggctgccataaaggaa
tttactgatttgggtagcggctttaagattgctatgcgagatttggaaatacgaggagcg
ggcaatctgcttggtgttgagcaacatggaaacatgactgcggtaggctacgatctatac
tgcaagatgcttaatgaggcggtaaagaaggagaagggtgaaataaaagaagataccttc
aatacttctgtggatatcaatatagaggcttatcttcctgatacctatgtatcaaatgag
gagcagcgaatcgatatttacaagcgaattgcagctattgattctgaggaagcaagggat
gatatgcttgacgagcttgttgatagatttggtgagcctaagcgatgtgttcagaatctt
ctttgggtggcaatgcttagggttaaggcacatgatgcttatgtttcggcaatcgagcag
aagggtgatatcatcaggattgtgatgtttgagaaggcaaagattgatgtggcacagatt
ccagcattattagagcggaataatccacatattacctttgctgcggaccctaaaaatcct
gcgtttgtctttaacactaaggctaatactaggataaaacctaatgaggtttatgagtat
ttagaagattttcttttagacttgaagagtctcaaagttgaataa
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integrated database retrieval system
