Plutella xylostella (diamondback moth): 105381403
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Entry
105381403 CDS
T03915
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pxy
Plutella xylostella (diamondback moth)
Pathway
pxy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pxy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105381403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxy03021
]
105381403
03019 Messenger RNA biogenesis [BR:
pxy03019
]
105381403
Transcription machinery [BR:
pxy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105381403
Messenger RNA biogenesis [BR:
pxy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105381403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
DUF2125
Pfc11_Clp1_ID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
105381403
NCBI-ProteinID:
XP_048481219
LinkDB
All DBs
Position
14:10204239..10222604
Genome browser
AA seq
1719 aa
AA seq
DB search
MSKEIAEEYASSLSDLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEKVHPDIKLPV
LYLVDSIIKNVGGAYTSKFSEKIVNMFTRTFKQVDEKTRSQMFKLRETWHDVFPATKLYQ
LDVKVNLIDPAWPIQAQPQPSNIHVNPNYLKKPVATTSSVPVLTPEEEKMRAVLARKEQE
LLMLQRKKVEMELEQARRQCELAEKGVHMTAPLVPLSGYQVPMAMVNPHVSPALGALGTP
LVTHAAVVGESGGGVPVKQRLGPPVAKATGRIAPVSAAMLVPRRDPRLARAPPAPPATPA
PPAIAPNVFDIKPLDKPKRKNFVTIDVRPEHVPPRKRPERRDPRLEKKKDVDERKRQDKE
KRLAKKLEEEKQERNKKLQEKLKEEEKEEKMKLEIDANNFDIKSSPKNNVDDYINRLQID
HKKISKLPPIPKLSRNDDSSKTKDEVPSPVKKRKEAARAERKKKPRDGQNSESSPEKKAK
AKEAKETRKKQKEQPMDVDKPDPEVVSFKELKNYHKERYRRNRDKSESPEKIPEATQDTP
APDKQTSNIPGVVESKDVDLRVLAPIEAKASPVAQKRPSTEGQESKTKKTKLDKFDILFG
NEDVDLRQLPQVEEVKDTVPLASESPKADIDSRAINLEEDSETVDSPQASPKGKDWTEVK
KTPDAKGLSKLDQVRAKLAEATKRKDLLGRPSLSKSPSLERERRRTISNADDTDLRTEGE
DEVNKETISLILSQAKEHFKDGKMDKNQYNTLMFQVMQLNEKLKLKEAKQRESLEMSKRK
LHKVNVSDDDIEQNRFGDIDERVTPAFMDTPPNSQDVKQGMQDFDMRVAPDVMEGPMPRG
MRPPLPMPPMFPMGPAQGPYPPMWRPMRPRGEDFNGPRRPRGPMPPFFRNKFDKRIPRPQ
FEQRFGPPLIQPKVGMCQGPSPLTPYQRVESPPPLGAPGQLIPQTDFRVIEYIDQDPMKT
IDIDGVPREIRFYGETAVIMLDWDDPREIKFLPGARRITFDNKDSVVLDFNDEYKKVEID
EQVFDIRFGAPTRELYINGKWYECFFGAPPVALLIEGKPRMIQLDGPPPQVDIGKVRRTD
LIAGKINLIVDAQHMCPVFLDGKAQKFLINNQFFSIRFADSLRTVLINEVPFKVEFGGLP
KPIFIGQTKHFIRFSVLPRGVKPGQIEIAGMEGSLATPAGAAGVKAGAVSEGGEGEVKDE
VMETDQDEPSRPDKVLSPDGESNQGGLDMLASVMPSSMAPASSFSGYSMAEPLFSNPGAG
IPGLEPEEKPSIPVLGNINVNDLFAKLIATGIVQVPKEDAKEVKEEVKVKAKEDKSVIHV
VDLMKPETLRGKQPGLVSRLYGGMQCSGCGARFLPEHTVRYSQHLDWHFRQNRRERDSAR
RAHSRRWHYDLRDWLTYEELEDLDEREKSWFETGGSTETGVEPAAETPSVAAGAPADRHC
ALCGDAFDQFYNEDKDEWHLRNSVRHEDKNYHPLCFDDYKASLAKEEPEPEPKTEDTATE
EAPPATDKEEDAIEIKDADESSQMSDTDDVEVIEPVKEITEALEIDEGEEDDVIYKAEPV
EQVTVEDADTDDETAAERADRDQRHQFDLVKVKVEPVDPDDEPVITAEEEAVRTVPDAPS
ASVQSSIDGNLQLEAAPPAPPAFPAGGIRINITKTIPTLVTAPAIDTALEDISVEDEPPP
PGEEPELEYTLKPHLEGKEFSRQPPVQRGAELSGLCSIM
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggaaatcgcggaggagtatgcgtcgagcttgtcggatctgacggtgaacagc
aagcccctcatcaacatgctcacgatcctagctgaggagaacatcgagcacgccggggtg
atagttgaaactgtggagaagcatttggagaaggtccacccggacatcaagctccccgtc
ctctatttagtggactccatcatcaagaatgtcggtggtgcttacacgtctaagttttcg
gagaaaatcgtcaatatgtttactaggactttcaaacaggtggacgagaagactcgttct
cagatgttcaagctgcgggagacgtggcacgacgtgtttcctgcaacaaagctgtaccag
ctggatgttaaagtgaacctcatagacccggcgtggccgatacaggcccagccgcagccg
tccaacatccatgtaaatccaaattatctgaaaaagcctgtggccaccacctcatcagtg
ccagtcctgacccccgaggaggagaagatgcgcgcggtgctggctcggaaggagcaggag
ctgctgatgctgcagcgcaagaaggtggagatggagctggagcaggcgcgccggcagtgc
gagctggctgagaagggggttcatatgacggcgccgctagtccctctctcgggctaccag
gtgcccatggcgatggtgaacccgcacgtgtccccggccctgggggcactgggcactccg
ctcgtgacccacgcggctgtagtgggtgaaagcggtggtggtgtgccggtgaaacagagg
ctcggaccgccggtggcgaaggcgacgggccgcatcgcgccggtgagcgccgccatgctg
gtcccccgccgcgacccccgcctcgcgcgcgcgccccccgcaccacccgcgacccccgca
cccccagccatcgcccccaacgtcttcgacatcaaaccactcgacaaacccaagaggaag
aacttcgtcaccatagacgtcagacccgaacacgttccgccgagaaaacgaccggagaga
agagacccgaggttggagaaaaagaaagatgtcgacgaacgcaaacgacaagacaaagag
aagagactagctaagaaacttgaagaggaaaagcaggagagaaataaaaagctgcaggag
aaactgaaggaggaggagaaagaggaaaagatgaagctggagatcgatgcgaataacttc
gacatcaagtcgtcgcccaaaaacaatgtcgatgactacatcaatcggctacaaatagac
cataaaaagatcagcaaactgccgccgatacctaaactgagcagaaacgacgactcgtcc
aaaaccaaggacgaagtgccgtcgcctgtgaaaaaacgcaaagaggcggcgcgagctgaa
cgaaagaaaaaacctcgcgacggacaaaactccgaaagctccccagaaaagaaggccaaa
gccaaagaggccaaagaaacgcgtaagaaacaaaaagaacaacccatggacgtcgacaaa
ccggatccagaagtcgtgtcgttcaaggaactcaagaactatcacaaggaacgctatcgc
cgcaacagagacaagtcggaaagccccgagaaaatccccgaagcgacccaagataccccg
gccccagacaaacagacatcaaatataccaggggtggtggaaagcaaggatgttgacttg
cgagtgttggcgcccatcgaggccaaggcttcgcccgtcgcgcagaaacgaccttccacc
gagggccaagagagcaaaactaagaagaccaagcttgataagtttgatatactgttcgga
aacgaagatgtggacctgaggcagttgccgcaagttgaagaagttaaagacacagtccca
ttggcttcggagtcccctaaagccgatatagattccagggcgataaacttagaagaggat
tctgagactgttgattcgccgcaagcgtcgcctaaaggcaaggattggacggaggtgaag
aagactccggatgccaaaggcctgtccaagttggaccaggtcagagcgaagttggcagaa
gcgactaaacggaaagacctgctgggaagaccttcgctgtctaagtcaccaagcctagaa
agagaaagaagacgcacgatcagcaacgccgacgacacagacctgaggacagagggagag
gacgaagtcaacaaggagaccatctcgctcatactctcgcaggctaaggaacatttcaag
gacgggaaaatggacaaaaaccagtacaacactctcatgttccaagtcatgcagcttaac
gagaaactgaaactcaaggaggcgaagcagagagagtctctagaaatgtccaagaggaaa
cttcataaagtcaatgtaagtgatgatgatattgaacagaacagattcggtgatatagat
gagagggttactccagcatttatggacacgcctccgaacagtcaggatgtgaagcaaggc
atgcaggacttcgacatgcgagtggcccccgacgtgatggaaggcccgatgcctcgcggc
atgcggccgccgctgcccatgccccctatgttccctatgggccctgcccaaggcccatat
ccacccatgtggcgccccatgaggcccagaggagaagacttcaacggccccagaagaccc
cgtggccctatgccgccattcttcagaaataagttcgataagaggatccctagaccgcag
ttcgagcagagattcggtccgccgctcatacagcctaaagtaggcatgtgtcaggggccc
agtccgctaactccgtaccaaagggtcgagtcgccaccgccgcttggagcccctggacaa
ctcataccacagacagactttagggttattgaatacatagaccaggatcccatgaagacg
atagacattgatggcgtcccgagagagatcagattctacggggaaacggcagtcataatg
ctggactgggacgatccgagagaaatcaaattcttgcccggagccagaagaatcaccttt
gataacaaagactctgtggtcttggatttcaacgatgagtacaagaaagtggaaatagac
gagcaagtgttcgatattcgcttcggcgcgccgaccagggagctatacattaacgggaag
tggtacgaatgtttcttcggagcgccgccagtggctttactcatcgaaggcaaacccaga
atgatccaactagacggacctcccccgcaagtagacatcgggaaagtcagacgcacggac
ctaatagctggcaaaataaacctaatcgtagacgcccaacacatgtgcccagtcttcctc
gacggcaaagcgcagaagttcctaataaacaaccaattcttcagcatccgcttcgccgat
tccttacgcaccgtgttgataaacgaagtgccgtttaaggttgagtttggggggttgccg
aagccgatattcattgggcagacgaagcattttattcgcttctctgttctccctaggggg
gttaagccggggcagatagagatagcgggtatggaggggtcgctagcgacgccggcgggg
gccgcgggggtgaaggcgggcgcggtgagcgaggggggagagggagaagtgaaggatgaa
gtgatggagacggatcaagatgagccgagtcgacccgacaaggtgctgagtcccgacgga
gagagcaatcaaggtggcctagacatgctagccagtgtgatgccctcaagcatggctcca
gcctcatcgttctccggctacagcatggccgagcccctgttctccaaccccggggctggc
atcccgggcttggagcccgaagagaaaccctccatacccgtgctagggaacatcaatgtg
aatgatctgtttgctaagctgatagctacggggatagtgcaagtgcctaaagaggatgca
aaggaggtgaaagaggaagtgaaagtgaaagcgaaggaggataagagtgtgattcatgtg
gtggatctgatgaaaccggagactttgagaggcaagcagccgggcctagtctcccgtcta
tacggcggcatgcagtgcagcggctgcggcgcgcgcttcctgcccgagcacaccgtgcgc
tactcgcagcacctcgactggcacttccgacagaacaggcgcgagcgggactcggcgagg
cgcgcgcactccagacggtggcattatgatctgagggactggctgacgtatgaggagctg
gaggatttggatgagagagaaaagagctggtttgagactggcggttcaacagagacgggc
gtggaaccggcggccgagactccctcagtcgccgccggcgcgcccgccgaccgacattgt
gctctatgcggagacgcattcgaccagttttacaacgaagacaaggacgagtggcatctc
aggaactctgtgcgccatgaggataagaactatcatccgttgtgcttcgatgattataag
gcgtccctagcgaaagaagagccggaaccggaacctaagaccgaagacacagccacagag
gaagctccacccgccacagacaaggaagaagacgccatagagatcaaagatgcagatgaa
agttcacagatgtccgacacagatgatgtggaggtcattgaacctgtgaaggagattact
gaggctttggagatagacgaaggcgaagaggacgatgtcatctacaaggccgagcccgtg
gaacaagtgaccgtggaggacgcggacacggacgacgagacggcggccgagcgcgccgac
agggaccagcgacaccagttcgacttggtcaaggtcaaggttgagcccgttgatcctgac
gacgagccagtcatcacagccgaagaggaagccgtccgcaccgtgcccgacgccccgtcc
gcgtccgtgcagtcctccatcgacggcaacctgcagctcgaggccgcgccccccgcgccg
cccgccttccccgccggcggcatccgcatcaacatcaccaagaccatccccacgctcgtc
accgcccccgccatagacaccgctctagaggacatcagtgtcgaggatgaaccgccgccg
cccggcgaagaacccgagctagagtatacgctgaagccccatctagaaggcaaggagttt
agccgacaaccgcccgtgcaaagaggcgcggagctctcagggttgtgctcaattatgtga
DBGET
integrated database retrieval system
