Plutella xylostella (diamondback moth): 105395673
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Entry
105395673 CDS
T03915
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pxy
Plutella xylostella (diamondback moth)
Pathway
pxy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105395673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxy03019
]
105395673
03041 Spliceosome [BR:
pxy03041
]
105395673
Messenger RNA biogenesis [BR:
pxy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105395673
Spliceosome [BR:
pxy03041
]
Complex B
Other components
Prp19-related factors
105395673
Complex C
105395673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
TPR_7
Mad3_BUB1_I
PPR
TPR_10
ARM_TT21
ARM_TT21_C
DALR_1
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
105395673
NCBI-ProteinID:
XP_011565933
LinkDB
All DBs
Position
4:3663675..3666810
Genome browser
AA seq
845 aa
AA seq
DB search
MPFLDGKEIELVFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGSSKNEINLIYERAIKEL
PGSFKLWYNYLKIRRSQIKGKCVTDPCYDHVNNVFERSLVFMHKMPRIWMDYCTFLTDQC
KITITRKAFDSALRALPITQHHRIWPLYLKFLKKHDIPETAVRVFRRYLKLCPEDTEEYI
DYLTSIDKLDEAAVKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDKIHTLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPSPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKAHEIIDTYTEAVQTVDPKLAVGKLYSLWVAFAKFYEENDQIEDARLIFEKATQ
VPYAKVDDLASVWCEWAEMEIRHENYEEALKLMQKATVLPSRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLNRYNGTKLERARDLFEQCLENCPPEFAKSVFLLYAKLE
EEHGLARHAMAVYERATTSVLPEEMFDMFNIYIKKAAEIYGVPKTRQIYEKAIESLSEEK
AREMCLRFSEMETRLGEVDRARAIYAHCSQMCDPRITAEFWNTWKEFEVKHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVLNKG
NILFVRGETQGLKEADKVVNPDEIDIDEDDDEGSANSEEDEPVQKKTIPAAVFGGLAPST
SQDSD
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccttttcttgatgggaaggaaatcgagctggtgtttagtgaagaggacttaccttat
gaggaggaaattcttcgaaatccgttttctgtgaagcactggcttcggtatattgagcat
aagaaaggatcgtcaaaaaatgagataaatcttatatatgaaagagctattaaagaacta
ccaggttcctttaagctgtggtataattatcttaagataagaagatcacaaataaaaggc
aaatgtgttacagatccatgctatgaccatgttaataatgtctttgaaagatctttggtg
tttatgcataaaatgcccagaatatggatggactactgcacttttctgactgaccagtgt
aaaattacaattactagaaaagcatttgatagtgctcttcgtgccctacccatcacccaa
catcatagaatatggccactttacttgaagttcttgaaaaaacatgacatacctgaaaca
gctgttagagttttccgaagatacttaaaactgtgcccagaagatacagaagagtacata
gactacttgacatcaattgataagttagatgaagctgcagtaaaactagctcaaattgtt
aataatgaaaattttcaatctaaacatggcaaatccaaccaccaactgtggaatgaactg
tgtgagctaatatcaaagaatcctgataagattcataccctcaatgttgatgctattatt
agaggaggactaagacgatacactgatcaattgggacacttgtggaactcactggctgat
tattatgtacgaagtggactctttgatagagcaagagacatttatgaagaagctattcag
actgttaccacagtccgggactttacacaagtgtttgatgcttatgcacaatttgaagag
ctaagtttgagtaaaaaaatggaggaagttgctaaaaaaccaagcccaactgaagatgat
gatattgacttagaactacggctagcaaggtttgaataccttatggaaagaagactacta
cttctaaactctgttcttttacgtcaaaatccccacaatgtagcagaatggcacaaaaga
gttaagctttatgaaggcaaggctcatgagatcatagacacatatacagaagctgtccaa
acagtagatcctaaacttgctgttggaaaactgtactccctgtgggtagcctttgctaaa
ttttatgaagaaaatgaccagattgaagatgccaggttaatatttgaaaaggctacacag
gtcccgtatgccaaagttgatgatttggcatcagtatggtgtgagtgggctgaaatggaa
attaggcatgaaaactatgaagaggcactgaagttaatgcaaaaagccacagtattgccc
agcagaaaagtggcttaccatgatgatacagagactgttcaaatgagactttacaaatca
ttgaaggtatggtccatgtatgcagatctggaagaaagttttggaacatataaatcttgc
aaagctgtgtatgaccacataatagacttgaaaatcgccacaccacagataattatcaac
tatggtctctttttagaggaacataattactttgaagaagctttcagagcatatgagaaa
gggatagctctttttaagtggcccaatgtttacgacatatggaatacttaccttacgaaa
ttcttaaacagatataatggaactaaactagaaagagccagagatttatttgagcagtgc
ctagaaaactgccctcctgagtttgcgaaatcggtatttttactgtatgctaaactagaa
gaggaacatggtttggccaggcatgccatggctgtgtatgagcgtgcaactacttctgtt
ctcccagaagaaatgtttgatatgttcaacatttacataaagaaggccgcggaaatatat
ggggtcccgaagacacgtcaaatatacgaaaaagcgatagaatctttatcagaggagaaa
gcacgtgagatgtgcttacgattctcagaaatggaaacgcggcttggggaggtggatcgc
gctcgtgctatttacgcccactgcagtcaaatgtgtgacccgaggatcactgcagagttc
tggaacacttggaaagaatttgaagttaaacatggaaatgaagatacaatgcgcgaaatg
ttgagaatcaagagaagtgtccaagccacatacaacactcaagtgaacatgatgtctgct
cagatgctgagctctgcagcccaagctgctggtactgtttcagatcttgccccaggaatg
aaggatggcatgagaatgttggaggccaaagcagcagaaatggctgtacttaacaaaggt
aacatcctctttgtacgaggagaaactcaagggcttaaagaagcagacaaggtggttaat
ccagatgagattgacattgatgaagatgacgatgaaggctctgcaaatagtgaagaagat
gagccagtacagaaaaaaactataccagcagccgtttttggtggcttagctcccagtacc
agccaagatagtgattag
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