Plutella xylostella (diamondback moth): 105397558
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Entry
105397558 CDS
T03915
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pxy
Plutella xylostella (diamondback moth)
Pathway
pxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105397558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxy03019
]
105397558
03041 Spliceosome [BR:
pxy03041
]
105397558
03009 Ribosome biogenesis [BR:
pxy03009
]
105397558
03016 Transfer RNA biogenesis [BR:
pxy03016
]
105397558
Enzymes [BR:
pxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105397558
Messenger RNA biogenesis [BR:
pxy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105397558
Spliceosome [BR:
pxy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105397558
Complex C
U4/U6.U5 tri-SnRNP related factors
105397558
Ribosome biogenesis [BR:
pxy03009
]
Eukaryotic type
Pre-60S particles
Helicases
105397558
Transfer RNA biogenesis [BR:
pxy03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105397558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
105397558
NCBI-ProteinID:
XP_048489059
LinkDB
All DBs
Position
5:3956906..3966871
Genome browser
AA seq
1042 aa
AA seq
DB search
MADINSLFDCFEETDENVATKSFPNVKKEETQVTEETEAAGTEKSQESIEVESPTKKRPH
DDDVEEVTKKPKFEEEGDELLADLNLELLDSRIVIHTLETHEGCTHEVAIPPNHEYAPLV
PNSSEPAKQYSFILDPFQKEAIMCIDNIQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVI
YTTPIKALSNQKYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEVMREV
GWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHV
VYTEYRPTPLQHYIFPAGGDGMHLVVDEKGIFKEDNFNTAMTVLGNAGDAGKGDQRGRRG
GFKANAAQTNIFNIVKMIMERNFAPVIIFSFSKKDCEAYAMQMAKLDFNTIEEKKLVDEV
FNNAMDVLSEEDRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATE
TFAMGLNMPARTVVFTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKV
TPAVVKDMVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLID
KVKSKQKLYDAVSVEQEHSIASYCSTRSQLQLLGQQFRSFITKPQHLQPFLQPGRLLKIK
TEKHEYDWGITVNFRRQMPKGKKREEENPLTAETVLLVDVLLHVKRGTEDDPEKRVPCPP
GETGDVEVVSVIHTLIDQISTLRVYYPKDLNSSDNRKSVLKTINEVKKRFPEGPPLLNPI
KDMKIQDKVFLECVDNIKLLEERLYAHPLHTDKARGALQAAYERKQELLQELTLAKSELR
KAKSILQMDELKKRKRVLRRMGYCTATDVIELKGRIACELSSADELLLTELIFNGVFNSL
SPEQSAALVSCFVCDENSNQAPNSAADLKTVLRQLQEYARRIAKVSIDAKLDLDEDDYVN
KFKHTLMDVVLAWAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNVDLE
NKFSDAIKLLKRDIVFAASLYM
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcagatataaacagtttatttgactgctttgaagaaacagatgaaaatgtggccacc
aagagttttcccaatgtaaagaaagaagaaactcaagtgactgaagaaaccgaagctgct
ggtacagagaagtcccaggaatcaattgaagttgagtcaccaaccaagaagcgtccacat
gatgatgatgttgaagaagttacaaaaaagccgaagtttgaagaggaaggcgatgaatta
ctggctgatttgaacctagaactccttgattcccgcatagtaatccataccctagagaca
catgaaggctgtacacatgaggtggccataccaccaaaccatgagtacgctcctctggta
ccaaactcatcagaacccgccaagcagtacagctttatcttagatccttttcaaaaggag
gctatcatgtgtattgacaatatacagtcagtgctggtttctgctcatacttcagctggt
aaaactgttgttgcagaatatgcaatagcactgtcactgaaaaacaaacagcgagtgatc
tacacaactcccatcaaggcactgtccaatcagaagtaccgggagttttccgaggagttc
catgatgtgggtctgatcactggagatgtcaccatcaatccatcagcttcttgccttatc
atgactacagagattctgagaaacatgctgtacagaggatcagaggtgatgagagaagtg
ggatgggtggtgtttgacgagatccattacatgagagacaaggagagaggagttgtgtgg
gaagagaccctgatcctgctaccagacaacgtgcactacgtattcctctcggccaccatc
ccgaacgcccgtcagttcgcggagtgggtgtgtcgcctgcactcgcagccgtgccacgtg
gtgtacacggagtaccgccccacgccgctgcagcactacatattccctgcagggggtgat
ggcatgcatctcgttgttgatgagaagggaatattcaaagaggacaacttcaacacggca
atgacagtcctgggcaacgcgggcgacgcgggcaagggcgaccagcgcgggcgccgcggc
gggttcaaggccaacgccgcgcagaccaacatcttcaacattgtcaagatgatcatggag
aggaacttcgcgcctgtcatcatattcagttttagtaagaaggactgcgaggcgtacgct
atgcagatggcgaaattggactttaatactattgaagagaagaagctcgtagacgaagtg
ttcaacaacgcgatggacgtgttatccgaagaggaccgcaagttgccccaagtggagaat
gtcattccattactgcggcgaggaataggcatccatcacggcgggctgctgcctattttg
aaggaaactatcgagatcttgttcggcttggggcttattaaggctctattcgccacggag
acgttcgccatggggctgaacatgcccgccaggaccgtcgtgttcaccaactgccagaaa
ttcgacggaaaagacttcagatttataacatcaggcgagtacatccagatgtcggggcgc
gcggggcggcgcgggctcgacgacaagggcatcgtcatcctcatgatcgaccagaaggtc
acgcccgccgtggtcaaggacatggtgcaggggaaggctgatcctatcaactcggccttc
catttgacgtataatatggtactgaaccttctacgagttgaagaaataaatcctgaatac
atgctcgagagaagtttcttccagttccagaatcaggctgccataccggatttaattgac
aaggtgaagtccaaacagaagctgtacgacgctgtatccgtggaacaggagcactccata
gcttcgtactgcagcactcgctcacaacttcaactgctcggccagcagttccgctccttc
atcacgaaaccccagcacctacagccattcctgcagccgggtaggctgctcaagatcaaa
accgagaagcacgagtacgactggggcatcactgtgaacttccgccgccagatgcccaag
ggcaagaagcgtgaggaggagaaccctctgactgcggagacggtgttgttagtcgatgtg
ttgttgcacgtgaagagagggacggaagatgacccggagaaacgggtgccgtgtccgccg
ggggagacaggagacgtagaagtggtatcagtgatccacacactcatagaccagatcagc
actctgcgagtgtactaccctaaggacttgaactcatccgacaataggaaatccgtacta
aagacaataaatgaagtgaagaaacggtttcccgaaggacctccgctgctgaaccctata
aaggatatgaagatacaagacaaagtgtttttagaatgcgtggataatattaaactctta
gaagaaagactatacgcccatcccctgcacacagacaaagcgcggggcgccctgcaggcg
gcctacgaacgcaaacaggaactgctgcaagaactcaccctagccaagtccgaactcagg
aaagccaagagtatactgcaaatggacgaactgaagaagagaaaaagagtactgagacga
atgggatattgtacggcgactgatgtcattgagttgaaaggaagaattgcgtgtgaattg
agcagtgcggacgagctgctcctcaccgagctgatcttcaacggcgtgttcaactcgctg
tcgccggagcagagcgcggcgctggtgagctgcttcgtgtgtgatgagaactctaaccag
gcgccaaatagcgcggcggatttgaagactgtgctgaggcagttgcaggaatacgcgcgg
cgcatagccaaggtgtccatcgacgctaaactggacctggatgaagacgactacgtgaac
aagttcaagcacacgctgatggacgtggtgctggcgtgggccaagggcgcctccttcctg
cagatctgcaagatgaccgacgtgtttgagggttcaataatccgctgcatgcgccgcctc
gaggaggtgctgcgacagctgtgccaggccgccaagaacatcggcaacgtggacctcgag
aacaagttcagtgacgccatcaaactgctcaagagggacatcgtgtttgcggccagtctc
tacatgtag
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integrated database retrieval system
