Pyrococcus yayanosii: PYCH_03850
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Entry
PYCH_03850 CDS
T01543
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
pya
Pyrococcus yayanosii
Pathway
pya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYCH_03850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pya03019
]
PYCH_03850
Messenger RNA biogenesis [BR:
pya03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PYCH_03850
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PYCH_03850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Pinin_SDK_N
Motif
Other DBs
NCBI-ProteinID:
AEH24076
UniProt:
F8AH18
LinkDB
All DBs
Position
315951..316700
Genome browser
AA seq
249 aa
AA seq
DB search
MMDKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPR
EIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALLLELFPR
TAIDIFIEVLQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIEGQIVLDLNKEED
NYGEADVPVAIMPMKNDITLLQMDGYLTREEFIEAVKLAIKGAKAVYQKQREALKEKYIK
IAQEVEAGE
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgatggacaagcccgagggattgaagcttattgatgagaacgggcgaaggatagatggc
aggaagaagtacgagctcagaccaataaagatggaggtcggtgttctcaagaacgccgac
ggctctgcctacgtggagtggggtaaaaataagattttggccgcggtttatggtcctagg
gagatccatcctaagcacctccagaggcccgatagagcaatacttcgtgttcgctacaac
atggcccccttcagcgtcgaggaaaggaagaagcccggccctgacaggaggagcatagag
ataagcaaggtcataaagggcgcccttgagccggctctccttttggagctcttcccgaga
accgccatagacattttcatagaggttcttcaggccgatgctgggacaagggtggccggg
atcacggccgcctcgctggcattggcagacgctgggataccgatgaaggatcttgtggct
gcatgtgccgccgggaagatagagggacaaattgtcctcgacctcaacaaggaggaggac
aactacggtgaggcagacgttccagtcgccataatgcccatgaagaacgacataaccctc
cttcagatggacggctacctcacgagggaagagttcatagaggctgtcaagctggctatt
aagggggccaaggctgtttatcagaagcagcgcgaggctctgaaagagaaatacatcaag
atagcccaggaggtagaggcgggtgagtga
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