Pyrococcus yayanosii: PYCH_04720
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Entry
PYCH_04720 CDS
T01543
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pya
Pyrococcus yayanosii
Brite
KEGG Orthology (KO) [BR:
pya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pya03032
]
PYCH_04720
03400 DNA repair and recombination proteins [BR:
pya03400
]
PYCH_04720
Enzymes [BR:
pya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PYCH_04720
DNA replication proteins [BR:
pya03032
]
Prokaryotic type
DNA Topoisomerases
PYCH_04720
DNA repair and recombination proteins [BR:
pya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PYCH_04720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Intein_splicing
Toprim
Zn_ribbon_Top1
LAGLIDADG_3
Hom_end
LAGLIDADG_1
Motif
Other DBs
NCBI-ProteinID:
AEH24162
UniProt:
F8AHG4
LinkDB
All DBs
Position
390081..393551
Genome browser
AA seq
1156 aa
AA seq
DB search
MILIIAEKPNVARKIASALAEGRPVKKSIYGVPYYELTRDGKRLIVAPAVGHLYGLAPKR
DFFGYPIFDIEWVPVYVAEKGKEYAKDYIKALSVLAKRAKEFVVATDYDTEGEVIGYTAL
KYACGVDPRKAKRMKFSALTKRDLLKAWYNLEPTINFGMAGAGIARHVLDWYWGVNLSRA
LTHAIKRASGKWVVLSTGRVQGPTLKFLVDREREIQNFVPKPYWIIKLILEKNGRKLTAT
YEKDKVWDEEEAKRIVQEARKGYAIVENIDVRRLQRNPPVPFDLGTLQREAYSAFGYSPK
KTLDIAQSLYEKGYCLHPDSLIPTPDGIKKIAELPKEGEVLALDFNLKLSRARYRLLERD
ADELMYKVTLGDRTELYLTADHPVLVCRDDKLIFVPAEELKESDQVVLVIAREGFKGREN
PPTLLDFLLENARTMKDYILYDPEFGKDLRRRLKERGLKVEVMAEFNIRESTYYNYLRGK
MPVPIAKFLLDKGVISREELRSVFRGFAYSTSLSPISFEFSEEFWYLYGFVVGSSYTVKN
GALVISAKEREEDIVRAIREVANSLGVPFRYDAKYKLIIIRSKSLTRLFELLGCSYGNKT
RTFRIQGIVVSRPGWIAAFLAGYCDADAHIRVKPTGSRKSLSPQIVLTSKNKEVIYTIKL
MWQLLGVRTYLLEKKDKNGVVYELKVYPKDVPRFYEVLRSFLIVKRKDLERVIEIVAGKR
AINIEETAIPLTDEDLRRIATGDVYLLKVNGIEKFRYRGKVYDLVVEDYHNFIANGVVVH
NCSYPRTSSQKLPKNLNFGAILQGLSKLPEYRPFAHMLLGKEVLKPVEGKKEDPAHPAIY
PTGEVPKPGELTKDEQNLYDLIVRRFLALFMEPAVRESVKVTIKAGSHRFILSGARTVKE
GWLRVYGKYVKFDEVLLPGFRRGEPVRVLQVKREKKKTKPPARYSPAAVIKKMEDLGLGT
KATRAQILETLYQRGYIEGKKSIKVTPLGMKVVETLEKHVPEIVSVELTREFEEKMELIM
NGKLTKEAVIEEAKERLLKILEEFKRKELEIGRELAKIVIGEDLVEDKREDIVVVGKCPK
CGGDLVVKYNRKTGKRFVGCSNWPKCDVTYPILQRGEIIPTNKTCCDGTPIVIIREEDGR
EYEICLDIRCRKGKGR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgataatagccgagaagcccaacgtcgcccgcaagatagcctcggccctcgcc
gaaggtagacctgtgaagaaatcaatctacggcgttccctactacgagctgacaagggac
gggaaaaggctcatagtggcccccgcagtgggccatctctacggcctcgccccaaagcgg
gacttctttggctatccaatattcgatatcgagtgggtgcccgtttacgttgcggagaaa
gggaaggagtacgcgaaggattatatcaaggctctttctgttctcgcgaagagggcgaaa
gagtttgtcgtggccacggattacgatacggagggcgaggtcataggctacaccgcacta
aaatatgcctgtggcgtcgaccccaggaaagccaagcgcatgaagttctctgcccttaca
aaaagggatcttcttaaggcgtggtataaccttgagccgacaataaactttggaatggcg
ggggctggaatagctcgtcacgtcctcgactggtactggggagtgaacctctcccgggcg
ctaacgcacgcgatcaaaagggccagcggaaagtgggtagtcctctcaaccggtagagtt
cagggaccgacgctaaagttcctagtggacagggaaagggagattcagaactttgtgccc
aagccttactggatcatcaagctcatcctcgagaagaatgggcggaagctgacggccacg
tacgagaaggacaaggtctgggacgaggaggaagccaagagaatagttcaggaggcccgg
aaaggatatgcgatcgtcgagaacatcgatgttaggaggctccaaaggaatccccccgtc
ccctttgaccttggaactctacagagggaagcctactcggccttcggttactctcctaag
aagaccctcgacatagcgcagagcctgtatgaaaaaggatactgcctccatccggattcc
ctaatacccaccccggacgggattaagaagatagccgaactacccaaagagggagaagtg
cttgcactcgactttaacctgaagctttcgagggctagataccgcctcctcgagcgtgat
gcagacgaacttatgtacaaggttaccctgggtgacagaaccgagctttatctgaccgcc
gaccatccggtgctcgtttgccgtgacgataagctcatttttgtcccagcggaagaattg
aaggagagcgaccaggtcgttctcgtgattgcaagagaaggctttaaaggtagagaaaat
ccgccaacacttcttgacttcctcttagaaaacgcccgcacgatgaaggactacatcctg
tacgaccccgaattcggaaaggatctcaggaggaggctcaaggaaaggggtttgaaggtt
gaggtgatggcagaattcaacatacgggagtcaacgtattacaactacctccgcggcaag
atgcccgtgccaatcgcgaagttcctgcttgacaaaggagttatttctcgggaggaactc
agaagtgtgtttagaggctttgcctacagcacatctctctccccaatcagcttcgagttc
agcgaggagttctggtatctgtacggttttgttgtcggtagcagttataccgtaaagaat
ggcgcattagtgatatccgcaaaggaaagggaagaggacatcgtgagagccatcagggag
gtcgccaattccctaggagtgccattcaggtacgatgcaaagtataagctcataattatc
cgcagtaagtccctgacaaggctctttgaactgctcggttgctcatatgggaacaagacg
agaacatttagaatccagggtattgttgtatcaagacctgggtggatagcggctttcctt
gcaggctactgtgacgctgatgcccatataagagttaagcccactggaagcagaaagtcg
ctctcgccccagatagtgctgacgtcgaagaacaaggaagtaatctataccatcaagctg
atgtggcagctcttgggtgtcaggacttatctgctggagaaaaaagataaaaacggagtc
gtgtacgagttgaaagtttatcccaaagatgttcccaggttttacgaagttctgaggagc
tttctcatagtcaagcggaaagacctcgaaagggttattgaaatagtggcaggtaagcgt
gcgataaacatcgaggaaacagccattcccctgaccgatgaagacctgaggagaatcgcc
acgggagacgtttaccttctgaaggtaaatggcattgagaagttccgctaccgtggtaag
gtgtatgacctcgttgtggaagactatcacaacttcatcgccaacggcgttgttgttcac
aactgctcatatccaagaacctcgtcccagaaacttccaaagaacctcaacttcggggct
atccttcaggggctctccaagcttcccgaatacaggcccttcgcccacatgcttcttggc
aaggaagtcttgaagcccgtggagggcaagaaggaagatcccgctcatccggctatatac
cccacgggtgaggtgccaaagccgggggagctgacgaaggatgagcagaacctctacgac
ctgatagtgcgcaggttcttggccctctttatggagccggctgtgagggagagcgtgaag
gttacgattaaggcaggttcccaccgcttcatcctgagcggtgccaggaccgttaaggag
ggttggctgagggtttacggaaagtacgtcaagttcgatgaggttctcttgccgggtttc
aggagaggcgagcctgttagggtccttcaggtgaagagggagaagaagaagactaaaccg
cccgcccgctactcacctgcggctgtgattaagaagatggaggacctcggcctcggaacc
aaggctacgagagcccagatacttgaaactctctaccagaggggctatatagaggggaag
aagagcatcaaggtgacgcccctcggcatgaaggtagtggagaccctggagaaacacgtg
cccgaaatagtgagcgtcgagcttacgagggagttcgaggaaaagatggaactcataatg
aatggcaagctcacgaaggaggccgttatagaggaggcgaaggagcggctgctgaaaatc
ctggaggagttcaagaggaaggagctggagataggcagggagctcgccaaaatagttata
ggagaagacctcgtggaggataagagagaggacatcgtcgtggtgggcaagtgccccaag
tgcggcggcgacctcgtcgtgaagtataacaggaagactggaaagaggttcgtcggatgc
tccaactggccgaagtgcgatgttacctatcctatactccagcggggcgagataatcccg
acgaataagacctgctgtgacggcactcccatcgttataatcagggaggaggacgggaga
gagtatgagatatgccttgatataaggtgcaggaaggggaaggggaggtga
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integrated database retrieval system
