Pyrococcus yayanosii: PYCH_14980
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Entry
PYCH_14980 CDS
T01543
Name
(GenBank) putative ss-DNA-specific exonuclease recj related protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pya
Pyrococcus yayanosii
Pathway
pya03410
Base excision repair
pya03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PYCH_14980
03430 Mismatch repair
PYCH_14980
03440 Homologous recombination
PYCH_14980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pya03400
]
PYCH_14980
DNA repair and recombination proteins [BR:
pya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PYCH_14980
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PYCH_14980
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PYCH_14980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AEH25166
UniProt:
F8AGG6
LinkDB
All DBs
Position
complement(1309130..1310563)
Genome browser
AA seq
477 aa
AA seq
DB search
MDKNAFLERAREGAELIKMHVELEHTIRIISHRDADGITAGAILAKAVAREGGKFHLSII
KQVSEELIRELREEDYRIYVFSDLGSGSLNLIREHLGDRTVIIADHHPPEDGELPDGHVL
VNPVPFGANSVRDLSGSGVAYFIAREINRKNRDLSYLALVGAVGDMQENDGVFHGMNLDI
IEDGKALSIVEVRKELRLFGRESRPLYQMLAYATNPELPEITGDERKAIEWLRSKGFDPD
VKYWQLREEEKKRLHDLLVIHLLKHGATKEDVDRLIGDVVLITIYPEGDPRHEAREFATL
LNATGRLNAGTLGVAVCFGDENAFKRALKLVEDYKREQIEARKYLIQNWESLLWEGEHVY
VLYAGKAIKDTLVGIAASMAINAGLADPEKPVIVLADSEENEELMKGSARTTERALAKGY
HLGEALRKAAEILGGEGGGHAIAAGIRFPKDKLEEFQELIDRLLGEQVGAHGDKGRG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggacaagaatgcctttttggagagggcccgggagggtgccgagctaataaagatgcat
gtggagctagaacacaccatcaggattatctcccaccgcgatgccgatgggataaccgcg
ggggctatcctcgcgaaggccgtcgcgagggagggcggcaagttccacctcagcataatc
aaacaggtaagtgaggagctcataagggagctgagggaggaagactacaggatatacgtc
ttcagcgaccttgggagcggttccctgaacctcataagagagcatctcggggacaggaca
gtgatcatagcggaccatcacccccctgaggacggggaactgcccgatggacacgtcctc
gtaaaccctgtccccttcggggccaacagtgtccgcgatctaagcggttcgggtgtcgcc
tactttatagcgagagaaataaaccggaaaaacagagatctcagctacttggctcttgtg
ggggctgttggagacatgcaggagaacgacggcgtgtttcatggcatgaacctcgatata
atcgaggacgggaaggctcttagtatagtcgaagtgaggaaggaattgaggctttttggg
agagaaagccggcctctctatcagatgctagcctacgctacgaatccggagctcccggag
ataacgggcgacgagagaaaagccatagagtggctcaggagcaagggctttgatcccgac
gtaaagtactggcaactgcgcgaggaggagaagaagaggctccacgacctccttgtcatt
cacttactcaagcatggggccacgaaggaggacgttgacaggctgataggcgatgtcgtt
ctgataacaatatatcccgaaggagacccaaggcatgaggcccgtgaatttgcaacactc
ctgaacgcgactggcaggctcaacgccgggacgctcggcgtcgccgtctgcttcggggat
gagaacgccttcaagagggccctcaagctcgttgaggactacaagagggagcagatagag
gctaggaagtacctgatacagaactgggagtccctcctctgggaaggcgagcacgtctat
gtcctctacgctggcaaggccataaaggatactctcgtcgggatagccgccagcatggcc
ataaacgctggtctcgccgacccggagaagccggtaatagttttagcggacagcgaggag
aatgaagaactcatgaagggctcagccaggacgacggagagggccttagcgaagggatat
cacttaggggaagcccttaggaaggccgctgagatccttggtggggaagggggaggccac
gccatagcggcgggtataaggtttcccaaggataagcttgaggagtttcaagagctcata
gacaggctacttggagagcaggtgggggctcatggagataagggccgaggttga
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