Pyrococcus yayanosii: PYCH_19250
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Entry
PYCH_19250 CDS
T01543
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
pya
Pyrococcus yayanosii
Pathway
pya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYCH_19250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pya03019
]
PYCH_19250
Messenger RNA biogenesis [BR:
pya03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PYCH_19250
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PYCH_19250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
Auto_anti-p27
S1
A2L_zn_ribbon
HVO_2753_ZBP
Trm112p
FtrD-like
YnfU
DZR_2
Zn_ribbon_3
DZR
Zn_ribbon_IS1595
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AEH25578
UniProt:
F8AIG6
LinkDB
All DBs
Position
complement(1714757..1715347)
Genome browser
AA seq
196 aa
AA seq
DB search
MDDKKRAVKNGDFVLPGDYLGVIEEYLPGDGVIEEEGNLYATRAGMVRINPAKMEISVEP
ATDVPPMPKVNDVVYARVIEVKSQAILLQLIKIEGRNDREIAASKLAGIHISQVKDGFVE
DMGKEFKVGDIVRARVIADEKSPIQLTTKGQDLGVVFALCSRCRTPLIRKGSQLVCPKCG
NVETRKLSSLYRKVKL
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
gtggatgataaaaagagggcagtaaagaacggtgattttgtcctgccgggggactatctt
ggtgtgatagaggagtacctgccgggtgacggcgtgattgaggaagaaggtaacctctac
gccacgagagcgggcatggtcaggataaacccagcgaagatggaaataagcgttgagccc
gccaccgacgttcccccgatgccaaaggtcaacgacgtggtttacgcgagggtcatagag
gtcaagtcccaggcgattctgctccagctgattaagatagagggcaggaatgatagggaa
attgcggcgtcgaagctcgcggggatacacatatcccaagtcaaagacggcttcgtcgag
gacatgggaaaggagtttaaggtcggggacatagtcagagcaagggtcatagcggatgag
aagagcccaattcagctcacaacgaaggggcaggatctcggtgtcgtcttcgccctatgc
tcccgctgcaggaccccgctcataaggaagggcagtcagcttgtatgtcccaagtgcggt
aacgtcgaaacaaggaagctgtcaagcctttacaggaaggtgaagctatga
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