KEGG   Pyrococcus kukulkanii: TQ32_06795
Entry
TQ32_06795        CDS       T04365                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
pyc  Pyrococcus kukulkanii
Pathway
pyc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pyc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TQ32_06795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pyc03019]
    TQ32_06795
Messenger RNA biogenesis [BR:pyc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     TQ32_06795
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     TQ32_06795
SSDB
Motif
Pfam: ECR1_N EXOSC1 Auto_anti-p27 OB_RRP5_4th CvfB_2nd A2L_zn_ribbon S1 HVO_2753_ZBP Zn_ribbon_3 FtrD-like Zn_ribbon_IS1595 Trm112p DZR_2 DZR YnfU Zn_ribbon_CLPX_N HypA Zn_Tnp_IS91 Zn_ribbon_NOB1 Zn_Ribbon_TF S1_RRP4
Other DBs
NCBI-ProteinID: AMM54215
UniProt: A0A127BAJ8
LinkDB
Position
1282521..1283117
AA seq 198 aa
MDEEQKRRTVKEGDFVLPGDYLGVIEEYLPGDGVIVEDGNLYSARAGWVKIDKDKIEISL
KPASSTPPIPKVGDIVYARVIDVKQQAVLLRMIKIEGRDNREIATSKLAGIHISQVKDGF
VEDLRNEFKIGDIVRARVITDEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVCPK
CGNVETRKLSTLYRKVKL
NT seq 597 nt   +upstreamnt  +downstreamnt
ttggatgaggagcaaaagaggaggacagtgaaggagggagatttcgttcttcctggggac
tacctgggtgtaatagaggagtaccttcctggagatggcgtcatagtcgaggacggcaac
ctctattcggcaagggccggctgggttaagatagacaaggacaagatagagataagcctc
aagccagcctcctcaacaccgccaattccaaaagtgggggacatagtgtacgcgagggtt
atagacgttaagcaacaggctgtccttctgaggatgataaagattgagggcagggacaac
agggagatagcgacatcaaagctcgctggaatacacatctctcaggtcaaggatggcttc
gttgaggatttgaggaacgagttcaagataggggacatagtaagggcgagagttataacc
gatgaaaaaagcccgatccaacttacgacaaaggatcccgaccttggcgttgtctatgcc
ctctgctcgaagtgtaggactccgctggttagaaagggcaaccagctcgtctgcccgaag
tgcgggaacgttgagacgagaaagctttccacactctacaggaaggtgaaactatga

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