Paenibacillus yonginensis: AWM70_05260
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Entry
AWM70_05260 CDS
T04810
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pyg
Paenibacillus yonginensis
Pathway
pyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWM70_05260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyg03019
]
AWM70_05260
Messenger RNA biogenesis [BR:
pyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AWM70_05260
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ANS74054
UniProt:
A0A1B1MXZ7
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Position
1138100..1139782
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AA seq
560 aa
AA seq
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MSKKNNNDKLSIFSLGGVAEIGKNMYVIQYANDIVVIDAGLKFPEEDMLGIDIVIPDISY
LTENRDKVRGIVLTHGHEDHIGGLPYVLKNLNVPVYGTKLTLGLVENKLKEANLLGETKR
ILIDADSEIQLGSTLKATFFATNHSIPDSVGVCVETPEGNVVHTGDFKFDHTPVNGQFAD
LQRMAQIGARGVLALLSDSTNAEKPGFTPSEKSVGEVLDDIFSKAEQRVVVATFASNVHR
IQQVMNAAYNTGRKVTIIGRSMVNVVGIASDLGYLEVPDGLIIEPEEVNKMAADRVVILC
TGSQGEPMSALTRMARSTHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGANVIY
SRSNSGVHVSGHGSQEELKLMLNLMKPKYFIPIHGEHRMLRRHALLGESVGVEHENIFLI
DIGDVVEIQNGVARKAGKVQSGIVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
DGKIVSGPDIISRGFVYVRESEGLLDEANRIVSSTLEKLMSEKVNEWASLKTNVKDSLGR
FLYEQTRRRPMILPIIMEVN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaaaaaaataataatgacaaactaagcatcttctcgctcggcggcgtagccgaa
attgggaagaacatgtacgtaattcagtacgccaatgacatcgttgtcattgatgcgggc
cttaagttccctgaggaggacatgctcggcatcgacatcgtcattcccgatatctcttat
ttgactgagaatcgcgataaagtcagagggatcgtattgacgcacgggcacgaagaccat
atcggcggattgccgtacgtacttaaaaatttgaatgttccggtttacggaactaagctg
acactcggactagttgagaacaaattgaaagaagccaacctgttgggagaaaccaaacgg
attctgattgatgccgattcggaaatccagctgggaagtacgctgaaagcaacgtttttt
gctacaaaccatagtattccggactcggttggcgtatgcgtagagacgccggaaggcaat
gtggtccacacgggtgactttaaatttgaccatactccagttaacggtcaatttgcggat
ttgcagcggatggctcaaatcggcgcacggggcgtgcttgccctgctttctgacagtacg
aatgctgagaagccgggctttacgccatcggagaagagtgtcggcgaagtgctcgatgat
atcttcagcaaagccgagcaacgggttgtcgtggcaacctttgcgtccaacgtacaccgg
atccagcaggtaatgaatgccgcttacaatacggggcgtaaagtaacgattatcggccgc
agtatggttaacgtagtaggaatcgcatccgatctgggttatcttgaggtaccggacggc
ttgattatcgaacctgaagaagtcaataaaatggctgctgatcgtgttgtgattttgtgc
acgggttctcagggcgaaccgatgtccgctttgacacgaatggctcgttccactcaccgt
aaggtggatattttgccgggagataccgttatcattgcagctactccggttccaggcaac
gagaaatatgtaggccgtaccattgacgaattgttccgccttggcgcaaatgtaatttac
agccgttccaattccggcgttcacgtatccggtcacggcagccaggaagaattgaagctg
atgctgaacctgatgaagccaaaatattttattccgattcacggtgaacaccggatgctt
cgcagacacgctttgcttggcgaaagcgtaggcgtggagcatgagaacatcttcctcatc
gacatcggcgatgttgttgaaatccaaaacggggttgcccgcaaggcaggcaaagtgcag
tcgggcatcgtcctgattgacggactgggcgttggtgatgtaggaaacatcgtattgcgt
gaccgtaagctgctgagccaggatggtatccttgttgtagtagttacgctgagcaaacaa
gatggcaaaatcgtctctggtccggatattatttccagaggtttcgtatatgttcgggaa
tccgaaggtttgctggatgaagcgaaccgcattgtaagcagcacgcttgagaagctgatg
agcgagaaagtcaacgaatgggcatcgctgaaaaccaatgtcaaggattcgcttggacgt
ttcctttacgagcaaacccgccgcagaccgatgattcttccaattattatggaagttaat
taa
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