Phormidium yuhuli: NEA10_04560
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Entry
NEA10_04560 CDS
T08410
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pyh
Phormidium yuhuli
Brite
KEGG Orthology (KO) [BR:
pyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyh03400
]
NEA10_04560 (sbcC)
DNA repair and recombination proteins [BR:
pyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NEA10_04560 (sbcC)
Archaeal homologous recombinant proteins
NEA10_04560 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SbcC_Walker_B
AAA_15
Rad50_zn_hook
AAA_29
AAA_27
AAA_21
ABC_tran
DUF6124
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
USR92002
LinkDB
All DBs
Position
complement(1067484..1070501)
Genome browser
AA seq
1005 aa
AA seq
DB search
MIPLQLTLHNFFSYQSACLDFSGLHTACICGENGAGKSSLLEAISWVVWGKSRASSEDDI
VRIGQKEAWVDFVFESQGQVFRIKRSHRRGQSSSLEFQIETGQGFRSITGKGLRATQQKI
LEQLKLDYDTFLSSAYLRQGQADEFMVKKAAQRKQVLVDLLKLDHYDQLAERAREIAKQG
KTEEKLLQEAVTRLEMTLAADPDLEKDLQDVAAQVAELQAQQSQRTDRLQDLQHQQAQRQ
RWQHQLDWAAAQGERLQEDYERDRLQQEQLQAQQAQLTAVLEQAVEIERGYQEYQRLLSQ
ERDWTERFSRYQDASQRESRLRQELDGRKLELQQQLHQEQAQLQACDRQLDQLQQSLQRE
PQIQAGLAQLAKAKAQLQEMEHCYSQAAPLQQRQQRLQGERDRVRAQLEARLEQLQQRQA
QLEQRQAQRPQLEEALAQVSEQIEALDKLRVYHKRVKEKGLERRSFLDGLHGSLQEQQRR
LEEMEQKRSLLQTPDAACPLCDRPLDEHHWQLVAGKHEQQHQELRHQQWLIQEQIAISER
EIQVLRQEYRQLEQQLGDYDRLREERGQRQAQLAATQEEWDLLQKLHAESQELAQALAEG
DYAPGIAEELASVEEQLAVLNYDERELALARGAVERYRWADLQNAQLEQSRRQMQQLQEQ
RPELEATVAVREQALQELASEGETARELRDLQQYIRSLDYDVEAHRQLRQQLDQAEGWRS
QWQLLENAQQALPGVKTQLEHLAERLEGRQRELEQWRAQMQETQAALADSPDCSQEMAQV
QAQLEQGRSHLNERSSQLGRLQQQQQHRQAQQAHLEEQRQQLARSQRQHRVYQELSQAFG
KNGIQALTIETVLPQLEAEANQFLARLSANQLHVQFVTQRASKGSKKSRKLIDTLDIYIA
DARGTRAYETYSGGEAFRINFAIRLALAKLLAQRSGAALQLLVIDEGFGTQDDRGCERLV
SAIEAIAPDFACILAVTHIPHLKEAFQTHVEVVKTDAGSQVCVSH
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgattcctctacagctgacgcttcacaatttttttagctaccaatccgcctgcctcgat
tttagtggcttgcatacggcttgtatttgtggggagaatggcgcgggaaaatcctccctc
ctggaagccatttcttgggtggtttggggcaagtcccgagctagctcagaagatgatatt
gtccgcattggccaaaaagaggcttgggtggattttgtctttgaatctcaagggcaagtc
tttcggattaagcgatcgcaccgccggggacagtcgagttccctggagtttcaaattgag
acgggtcagggattccgctcgattacgggcaagggcctacgagcgactcagcagaagatt
cttgagcagctcaagctggactacgatacgtttttgagttctgcctatctgcgtcagggc
caggccgatgagtttatggtcaagaaggcggctcagcgaaaacaggtgttggtggatttg
ttgaagttggatcactatgatcaactggctgagcgagcgagggagattgccaaacagggg
aaaactgaggagaaactcttgcaggaggcggtgactcgcttggagatgaccttggcggct
gacccggatttggagaaggatttgcaagatgtggcggcgcaggtggctgagttacaggct
caacagtctcagcgaacagaccggttacaggaccttcaacatcaacaggctcaacgacag
cgttggcaacatcagttagactgggcggcggctcagggggaacggctccaggaggattat
gagcgcgatcgcctacagcaggagcaacttcaggcccaacaggcccagttaacggcggtg
ttggagcaggcggtggagattgaacggggatatcaggagtatcaacgcctgttgagccaa
gagcgggattggacggaacggtttagtcgctatcaagatgcgagtcagcgtgagagtcgg
ctgcgtcaggagttggatggccggaaactggagttgcaacagcaattgcatcaggaacag
gctcaactccaggcctgcgatcgccaattggatcagttgcagcagagtttacaacgggaa
ccacaaattcaagcgggactggcccaactggctaaggcgaaagcgcagttgcaggagatg
gaacattgctacagtcaggcggctcctctacaacagcgtcaacaacgactgcaaggggaa
cgcgatcgcgtccgggcccaactcgaagcccgtttagagcagctgcaacagcgacaggcc
caactggaacaacgtcaggcccaacggccacaactggaggaggctctggctcaggtgagt
gagcagattgaggctctggacaaattgcgggtatatcacaaacgggtgaaggagaaaggc
ctggaacggcgcagttttctcgatgggttgcatggcagtcttcaggagcagcaacgccgc
ttggaggagatggaacagaaacggagcttgttgcaaactcctgatgcggcttgtcctctg
tgcgatcgccccctagatgaacatcattggcagttggtggcgggaaaacatgagcagcag
catcaagaactgcgacatcaacagtggctgattcaagagcaaatcgccatttcggaacgg
gaaattcaggtgttgcgtcaggaatatcgccaactggaacagcaattaggagattatgac
cgcctacgggaagaacgggggcaacgacaggcacaattggccgcgactcaggaggaatgg
gacctcttgcagaagctgcacgctgagagccaagagctggcccaggccctggccgaggga
gattatgctccgggaattgctgaggagttggccagtgtagaggagcagttggcagtcctg
aactatgatgagcgggagttagcgttggctcggggggcggtggaacgctaccgctgggcg
gatttacagaatgcccaactggagcagtctcggcgacagatgcagcagttgcaggagcaa
cgaccggagttagaagcgacggtggcggtccgggagcaggctctccaggagttggctagt
gagggggagacggcgcgagagttacgggatttgcaacagtatattaggagccttgactat
gatgtggaggctcatcgtcagttgcgtcagcagttggatcaggccgagggatggcgatcg
caatggcaattgttagagaatgctcagcaggccttaccgggggttaagactcagttagag
catttggctgaacgcctggagggacgacaacgggagttagagcaatggcgagcgcagatg
caggagactcaagcggctctggcggactctcccgattgttctcaggagatggcccaggtg
caggctcaactggaacaggggcgatcgcatctgaatgagcgttcatctcagttagggcgg
ttgcagcaacaacaacaacatcgtcaggcccaacaggcccatttagaggaacagcggcag
cagttggcccgcagtcaacgacagcatcgggtgtatcaggagttgagtcaggcgtttggg
aagaatggcatccaagccctgacgattgagacggtactgccccaattggaggcggaagcg
aatcagtttttagcccgtctcagtgccaatcaacttcatgtgcagtttgtgacccaacgg
gcctcgaaaggcagtaagaaaagccgcaagctcattgataccctggatatttatatcgcc
gatgcccggggaactcgggcctatgaaacctattctgggggggaggcctttcgcattaac
tttgccattcgcttagctctagctaaactcctggctcagcgttcgggggcggcgttgcag
ttattggtgattgatgaggggtttggcactcaggatgaccgtggctgtgagcgattggtg
tccgccattgaggcgatcgccccagattttgcctgtattctggcggtcactcatattccc
catctcaaagaggcctttcaaacccatgtagaggtggtgaaaaccgatgccggttctcaa
gtttgcgtctcccattaa
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