Phormidium yuhuli: NEA10_04925
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Entry
NEA10_04925 CDS
T08410
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pyh
Phormidium yuhuli
Pathway
pyh03410
Base excision repair
pyh03430
Mismatch repair
pyh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NEA10_04925 (recJ)
03430 Mismatch repair
NEA10_04925 (recJ)
03440 Homologous recombination
NEA10_04925 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyh03400
]
NEA10_04925 (recJ)
DNA repair and recombination proteins [BR:
pyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NEA10_04925 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NEA10_04925 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NEA10_04925 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
USR92069
UniProt:
A0ABY5AS76
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All DBs
Position
1146836..1148947
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AA seq
703 aa
AA seq
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MPPHLPNQRWTLADLPDAEIQSLAESLNVSPLIAQILMERGFESPEMARIFLEPDSLELP
PPIQDFPDLAISLDLIVEMIETERPIAICGDYDADGMTSTALLLRALGRLGAKVDYAIPS
RMSDGYGINSRLVNEFAEADVGLIITVDNGISAYGPVEEARELGMEVIITDHHDLPEVIP
PASSILNPKMAPENSPYRGMAGVGVAYMLAMHLAEHFKQGDAFRLPMLELLTLGTIADLA
PLTGVNRYWVSQGLHLLANSQIPGIQALVQVSGTGDKTQKALKPDAIGFRLGPRINAVGR
IGDPQLVIELLSTDDAGIALERAMQCEQINRTRQEMCEEIEREAIAWSDSLRDRLPETRV
LVPLQANWHHGVIGIVASRLVERYGVPVFICTYEDEELQQVRGSARGIPEFNVFEALNYC
GDLLTKYGGHPAAGGFSLPEANLEAFRERLSEFACHCLQPEHLKPLIRLSGELTFEELDL
ERFEEVEQLQPFGIGNPTPVFYSSQVRVLNQKTVGKGHLKLELAQGDSETSIGAIAWRWG
EYFPLPSPLDLAYKLGENEWQGQVSLQLEVVGARCPEGVVWESRKTDISSSVTPAEEEIP
EARVIESTESPRTEAQKAATTTGDRLQQFKYRNRVYFCGLYAHGDRKELRIRNDRGQVLA
VNQGSQTGLLGTSRQNARYVDVRERRFYDLIKAALAVLNGSSS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgcctcctcatctccctaaccaacgctggactttggcggatctccctgacgctgagatc
caatccctggctgaatctctcaatgtctctcccctgattgcccaaatcctcatggaacgg
ggcttcgagagtcctgagatggctcggattttcctggaacccgacagcctcgaactccca
ccccccattcaggatttccccgatttagcgattagtctcgatctcattgtggagatgatt
gagacggaacggccgatcgccatctgtggggactatgatgctgatgggatgaccagtaca
gccctgttgttgcgggctttgggacgcttgggcgcaaaggtcgattatgctatccccagc
cgcatgagcgatggctatggcattaactcccgcctagtcaatgagtttgctgaggcggat
gtggggttaattatcactgtcgataatggcattagcgcctatgggccggttgaggaagcc
cgagaactggggatggaagtgattattaccgatcaccatgatttgcccgaggtgattccc
cccgccagttccattctcaaccccaaaatggccccggagaactctccctatcgcggtatg
gcgggggtgggggtggcctatatgttggccatgcacctagcggaacattttaaacagggg
gatgcgttccgacttcccatgttggaactgctgacgttgggaacgatcgccgacttggcc
cccctaaccggtgtaaaccgatattgggtttcacaggggttgcacctcctggcaaattca
caaattccgggcattcaggcgctcgtgcaggtgtcgggaacgggggataagacccaaaaa
gccctcaaacccgatgccattggcttccgcctcggtcctcgcattaatgcagtggggcgc
attggcgatcctcagttggtgattgaactcctctcaacggatgatgcggggatcgccttg
gaacgggccatgcaatgtgaacagattaaccgcacccgtcaggagatgtgtgaggagatt
gaacgggaggcgatcgcctggagtgattcgttgcgcgatcgcctccccgagacgcgagtt
ctggttcctctccaggcgaactggcatcatggggtgattgggattgtggcctcccgtttg
gtggaacgctacggggttccggtgtttatctgcacctatgaagatgaggaactgcaacag
gttcgaggttcggcccgggggattcctgaatttaatgtctttgaggccctgaattattgc
ggcgatttgctgaccaagtatgggggacatccggccgccggagggttctcactcccggaa
gccaatttagaggcctttcgggagcggttgagtgagttcgcctgtcactgtttgcaaccg
gaacatcttaaacccctgattcgactgagtggggagttgacgtttgaggagttggattta
gagcggtttgaggaggttgaacaactgcaaccctttggaattggtaatcccacgccggtg
ttttattcctctcaggtgcgggttttgaaccagaaaacggtggggaagggccatctgaag
ctagaactggctcaaggggactctgagacatccattggggcgatcgcctggcgttggggt
gagtatttccctctacccagtcctctggatttagcctacaaactgggggagaatgagtgg
caaggacaagtttcgctccagttggaggtggtgggggcccgttgtcctgagggagtggta
tgggagtctcgaaagactgatatctcctcctctgttactccggctgaggaggaaattccc
gaagccagggtgattgagtcaacggagagtcctaggactgaggcccagaaggcggcgaca
accactggggacaggttacaacagtttaagtaccgaaatcgggtctatttctgtggcctc
tatgcccatggagaccgcaaagaactccgcattcgtaacgatcgcggtcaagttttggcg
gtgaatcaggggagtcagacggggttgctgggaacgtcgcggcagaatgctcgttatgtc
gatgtgcgagaacggcgattttacgatttaattaaagcagccctggccgtgttaaacggc
tcatcatcttaa
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