Phormidium yuhuli: NEA10_05990
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Entry
NEA10_05990 CDS
T08410
Name
(GenBank) ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pyh
Phormidium yuhuli
Brite
KEGG Orthology (KO) [BR:
pyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pyh03016
]
NEA10_05990
Enzymes [BR:
pyh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NEA10_05990
Transfer RNA biogenesis [BR:
pyh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NEA10_05990
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
USR92271
LinkDB
All DBs
Position
1382278..1384287
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AA seq
669 aa
AA seq
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MEKGNLIEFRLQGERRLAVLDRPEGKKNWVVVDEQGQTRTLSPKQMSYCLDGQSYQPSDL
GTFQSEVSTYLDPSSLEVAWELLSEDGESVAPPDLALLLFSDSTPPQCYAAHRLLSEDKI
YFKQKGDRYEPRPATQVAELKHQLEAEAQRQQAWDSFLARVQEALTGTAVDWEGADRPHL
EALERYATLGDEAPGRTAAQDVLSALDRPLTPQGAFAVLVDLGLWSPHENLFLRRTQIPT
HFSSKVLDVAQRCLTNCPPDTEANRLDLTHLKVYTIDDASTQEIDDGLSLEFVEGDRQRL
WVHIADPTRWLTPGDELDLEARRRCTTVYLPTGMTPMLPPELATGPMSLNSGQTCCALSF
SIILHADGSVEEFSIHPSLVKPTYRLTYDDVDEMLELGVQAEPELIAIADWAKTRHRWRQ
SQGSIFIDMPESAIKVKDNEVTIQVLDNSASRQLVAEMMILAGEVAARYAQEHNLAIPFR
HQSQPELPPDEELMQLPAGPVRACAIRKCMPRSEMSVFPNRHASLGLDTYTQVTSPIRRY
TDLLTHFQLKAHLRGDTQPFSSEQVQQLMMSVMVSAKEAVLVERQTCRYWAIEYLRRHGD
ETWQALMLRWIRPDDNLGSLLLEEIGIEFVWRFPRPMELGERFQVRVTHADPREDNIQFQ
EVVAHPAQV
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaaggaaatcttatcgaatttcgattacagggtgagcggcggctagccgttctc
gatcgtccagagggtaagaaaaactgggtggtcgtggatgagcagggccaaactcgaacc
ctatcgccaaaacagatgtcctattgcctcgatgggcaatcataccagccctcagactta
ggaacgtttcagtctgaagtcagtacctatctcgatccgtcgagtttggaggtggcttgg
gagttgctctcggaagatggagaatccgtcgcccccccagacttggccttgttactcttt
agtgactcaacccccccccaatgttacgccgcccatcggctgctgtctgaggacaaaatt
tattttaaacagaagggcgatcgctacgaacctcgccccgccactcaagtcgccgaactg
aagcatcaactcgaagcggaggcccagcgtcagcaggcctgggacagcttcttagcacga
gtccaagaggctctcacgggaaccgccgtcgattgggaaggggctgatcgccctcaccta
gaggcattagaacgctacgccaccctaggagatgaggccccgggacgaacagctgcccag
gatgtcctcagtgccctcgaccgccctctcacccctcagggtgcctttgccgtgctggtg
gacttaggcctatggagtccccatgaaaatctatttttgcggcgcactcagattcccacg
cacttctctagcaaggttctcgatgtggcccaacgctgtttaaccaactgtccaccggat
acagaagccaaccgcctagacttaactcaccttaaggtctacaccattgacgatgccagt
acccaagaaattgacgacggcctgagtctcgaatttgttgagggcgatcgccagcgactc
tgggttcacattgccgatcccacccgttggctcacccccggtgatgaactggacttagaa
gcccgccgccgctgtaccaccgtctatttgcctacggggatgacccccatgttaccccca
gaattagccaccggccccatgagccttaattctggacaaacctgttgtgccctcagcttc
agcattatcctccatgccgatggcagcgtcgaagagttcagcatccatcccagcctcgtc
aaacccacctaccgactcacctacgatgatgtcgatgaaatgctggagttgggagtccag
gcagaaccggaactaatcgcgattgccgattgggccaaaactcgtcaccgctggcgacag
tctcaggggtcgatctttatcgacatgccagaatcagctatcaaagttaaagataacgaa
gtcacgattcaggtcttagataactccgcctcccgtcagttagtggcagaaatgatgatc
ttggccggggaggtggccgcccgctacgctcaagaacataatctagccattcccttccgg
catcaatcccaaccggaactgcccccggacgaggaattaatgcaacttcccgccgggccc
gttcgtgcctgtgcaattcgtaaatgtatgccccgcagtgagatgagcgttttccccaac
cgccatgccagtctgggcttagatacctatactcaagtcacctcccccattcgccgctat
acagatttgctcactcactttcaactcaaagctcatctacgaggggatactcagcccttc
tctagtgagcaagttcagcagttgatgatgagtgttatggtgtctgccaaagaagcggtg
ttggtggaacgacaaacctgtcgctattgggcgattgaatatctacgccgtcatggtgac
gagacttggcaagccctgatgttacgttggattcgtccagatgataacttggggtcccta
ctcctcgaagagattggcattgagtttgtctggcgtttcccccggccaatggaacttgga
gaacggtttcaggttcgggtcacccatgctgacccacgagaggataatattcaattccaa
gaggtggtagcacatccggcccaagtttaa
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