Phormidium yuhuli: NEA10_14715
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Entry
NEA10_14715 CDS
T08410
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pyh
Phormidium yuhuli
Pathway
pyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEA10_14715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyh03019
]
NEA10_14715
03009 Ribosome biogenesis [BR:
pyh03009
]
NEA10_14715
Enzymes [BR:
pyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NEA10_14715
Messenger RNA biogenesis [BR:
pyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NEA10_14715
Ribosome biogenesis [BR:
pyh03009
]
Prokaryotic type
rRNA helicases
NEA10_14715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
SecA_DEAD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USR90091
UniProt:
A0ABY5AMC9
LinkDB
All DBs
Position
3428782..3430266
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AA seq
494 aa
AA seq
DB search
MTSVTSEQTSQPQTNTDTPSVVDDTPATFEAFDLRPEILEGIQEAGFRAPSPIQQQAIPV
ILQGRDAIARAQTGTGKTAAFGLPAMNAVHRDSSEGVQVLVIVPTRELASQVSDELYRLG
RCAGIRTVAVYGGQSIDRQVSLIRRGAQVVTATPGRLLDHLKSNRLKDFAPSIVILDEAD
EMLDMGFLDDIEEIFTYLPKERQTLLFSATLPSAIRQLSKKILTDPLSIDVTPKDSTVNT
DITQRYYVLEEREREEALVRLIDTEAPNKALIFCRTKKETDMLCTTLVSRGYAASSLHGD
MQQRQRNEAIESFKRGRIDLLIATDVAARGLDINDVTHVFNYHIPFDSDSYVHRIGRTGR
AGRKGTAITLVTPLEFKKLTRIMHIAGSPMVYGEVPTIGEAKKQYQVELASKLQHQHIQE
EAVELLQRLEEDVDINQIACKALSMLLEQQPVGGPSRIGFSVQEVENLLHRSKRRKSSPR
KRRNNYRPRRSNRR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgacatctgtaacttccgaacaaacctctcaaccccaaaccaacaccgataccccgtct
gttgtcgacgataccccagctacctttgaagcctttgatctacgcccagaaattctagaa
ggcatccaagaagccgggttccgcgccccgagccccatccagcagcaagcgattcccgtg
attctccagggacgagatgcgatcgcccgcgctcaaacagggaccggtaaaaccgctgcc
ttcggccttccggccatgaacgctgtgcaccgcgacagtagtgaaggggtgcaagtctta
gtcattgtccccacccgtgagttagcctcccaagttagcgacgaactctatcgcctcggc
cgttgtgccgggattcgcaccgttgccgtctatggtggacagtccattgaccgccaagtg
tccctcatccggcgtggcgcccaagtcgtgaccgcgaccccgggccgtctcctcgaccac
ctcaaatccaatcgcctcaaggactttgccccctcgattgtcattctcgatgaagccgat
gaaatgttggatatgggcttcctggatgatattgaggaaatctttacctatttaccgaaa
gagcgacaaaccctcctcttttctgccacccttccctcggcgattcgccagttatccaaa
aaaattctcaccgatcccctctccattgacgtcactcccaaagactcaacggttaatacg
gatattacccagcgttactacgtgctcgaagaacgggaacgggaagaagccctggtacgg
ctaattgataccgaagcccctaataaggccctcattttctgtcggactaagaaagagacc
gatatgctctgcacaaccctggtctcgcgggggtatgcggccagttccctccatggggat
atgcagcagcgacaacggaatgaagccattgaaagtttcaagcgaggacggattgatctc
ctcatcgcaacggatgtggcggcccgaggcttggatattaacgacgttacccacgttttt
aactatcacattcccttcgactctgatagctacgttcaccgtattggtcgcacaggacgt
gctggacgcaaaggcactgctattaccctcgtcacccccttagagttcaagaaactcacc
cggattatgcacattgctgggtctcccatggtctatggggaagttcccaccattggcgaa
gccaagaaacaatatcaagtcgaattggcctcgaaactgcaacatcaacatattcaggaa
gaagcggttgagttactacaacggctcgaagaagatgtcgatatcaatcagattgcctgt
aaggccctgtcgatgcttcttgaacagcaaccggttggcgggccgagtcgcatcggtttc
agtgttcaggaagtggaaaacctcctacaccgctccaagcgtcgtaagagcagtccccgc
aaacgccgcaacaactaccgcccccgccgcagcaatcgccgttaa
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