Phormidium yuhuli: NEA10_15075
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Entry
NEA10_15075 CDS
T08410
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pyh
Phormidium yuhuli
Brite
KEGG Orthology (KO) [BR:
pyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pyh03032
]
NEA10_15075 (topA)
03400 DNA repair and recombination proteins [BR:
pyh03400
]
NEA10_15075 (topA)
Enzymes [BR:
pyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NEA10_15075 (topA)
DNA replication proteins [BR:
pyh03032
]
Prokaryotic type
DNA Topoisomerases
NEA10_15075 (topA)
DNA repair and recombination proteins [BR:
pyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NEA10_15075 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
DegT_DnrJ_EryC1
Toprim_4
DUF6429
Motif
Other DBs
NCBI-ProteinID:
USR90158
LinkDB
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Position
complement(3514152..3516809)
Genome browser
AA seq
885 aa
AA seq
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MSTLVIVESPTKARTIRKYLPNDYQVEASMGHIRDLPQSASEIPAAVKKEKWSQLGVNVE
ADFEPIYVVPKDKKKVVKTLKDALKNATELVLATDEDREGESISWHLLQVLKPKVPTKRM
VFHEITEEAIQNALHHCRDLNEQLVHAQETRRILDRLVGYTLSPLLWKKIAPKLSAGRVQ
SVAVRLIVMRERERRAFRMGSYWDLKAHLSKDNTPFDAKLISVDGTKVATGSDFDENTGQ
IKAGRNVQLLNEADANALKERLLGKPWNVSNFEERQNRRKPAPPFTTSTLQQEANRKLRL
SARDTMRVAQSLYENGYITYMRTDSVHLSEQAIAAARECVTQMYGPDYLSPQPRQYATKS
KGAQEAHEAIRPAGNRFRTPRETGLKDRELALYDLIWKRTVASQMAEVRQTSLSVDLSVE
NALFRANGKRIDFPGFFRAYVEGSDDPDAALENREAILPALAVGDRPDCQDIEAVGHETQ
PPARFTEASLVKTLESEGIGRPSTYASIIGTIIDRGYAQMQNNALVPSFTAFAVCSLLEN
YFPDLVDLHFTAKMEATLDRISTGDVEWIPYLREFYSGDKGLDTQVRQQEDQIEPTEAKT
IVLENLPVNVRIGKFGPYLETEKDGETITASIPQNLTPSDLDSEQVEVLLRQKTEGPDKL
GMHPETGEPIYILIGSYGPYVQLGEVSDENPKPKRASLPKGQTPETITLETAVGLLSLPR
LLGVHPESGNKIQAGLGRFGPYIVHKKGGEDGKDDYRSIRASSEDDVLTIPLERALEMLA
EPKRGRGRRGSKKKPMRELGDHPTDKEPLNIYDGPYGPYIKYKRKNISIPDGDSAEELTL
ERAVELIAAKSSSRKTSTAKRKTTSKKTSTAKRKTTSKKTSNSDS
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccctggtcatcgtcgaatcccccaccaaagcgcgcaccattcgcaaatatctc
cctaacgactaccaggtcgaagcctccatgggacatattcgcgatctgccccaatctgcc
agcgaaattcccgctgcggtcaaaaaagagaaatggtcgcaactaggtgtgaacgttgag
gcggacttcgagccgatttacgttgtccccaaggataagaaaaaagtcgtcaagaccctc
aaagatgccttaaagaacgccacagaactggttttggccactgacgaagaccgggaggga
gaaagtattagttggcacttgctgcaagtcctcaagcccaaagtgcctaccaagcgcatg
gtcttccatgaaatcacggaagaggccatccaaaacgccctccatcactgtcgagacctc
aacgaacagctcgttcacgcccaagaaacccggcgcattctcgatcgcctcgtcggctat
accctctcccccctcctctggaagaaaatcgcccccaaactctccgccggccgagttcag
tccgtggccgtgcggctgattgtgatgcgggaacgggaacggcgagccttccgtatgggg
tcttactgggacttaaaagctcatctgagcaaagataacacgcccttcgatgccaaactc
atcagcgtcgatggcacaaaggtggccacggggagcgacttcgacgagaacactggacaa
attaaagccggccgcaatgttcaactgctgaacgaagcggacgccaacgccctgaaagag
cggttattgggcaaaccctggaacgtcagtaactttgaggaacggcagaaccggcgtaaa
cccgcccctcccttcaccacctcaaccctgcaacaagaagccaaccggaaattacggctg
tcagcccgcgataccatgcgcgtggctcagagtctgtatgaaaacggctacattacctat
atgcggaccgactccgtacatttatcggaacaggcgatcgccgccgcccgagaatgcgtc
acccagatgtacgggccagactacctcagcccccaaccccggcaatatgccaccaaaagc
aaaggggcccaggaagcccacgaagccatccgccccgccggaaaccgcttccggactccc
cgtgaaaccggactcaaagaccgagaactggccctctatgacctcatctggaaacgtacc
gtcgcctcccagatggctgaagtgcggcaaacctccctctccgttgatttaagcgtggag
aatgctctcttccgggccaatggcaagcggattgactttcccggcttcttccgcgcctat
gtggaaggctcagatgacccagatgcggccctagagaaccgtgaggcgattctaccggcc
ttggccgtgggcgatcgccccgactgccaagacatcgaagccgtcggccatgaaacccag
ccccccgcccgattcaccgaagcctccctcgtcaaaaccctggaaagtgaaggaatcggc
cgcccgagtacctacgccagcatcatcgggaccatcatcgatcgcggctacgcccagatg
cagaacaacgccctagttcccagctttaccgccttcgccgtctgtagcctgctggaaaac
tacttcccagacttagtggacttacatttcaccgccaaaatggaggccaccctcgatcgc
atctctaccggagacgtggagtggattccctatttacgagagttttactctggcgacaag
ggcctagacacccaagttcggcaacaggaagaccaaatcgaacccaccgaagccaaaacc
attgtcttagagaatctgccagtcaacgttcgcattggcaaattcggcccctacctagaa
actgagaaagacggcgaaaccatcaccgcctccattccccaaaacctcaccccctccgac
ttagactctgaacaagtcgaagtcttgttacggcaaaaaaccgagggtcccgacaaactg
ggaatgcaccccgagacgggggaaccgatttacatcctcatcgggagttacggcccctac
gtccaactcggggaagtcagcgacgagaaccccaaaccgaaacgggcctccctccccaaa
ggtcagaccccggaaaccattaccctagaaaccgccgtcggcttattgtccctcccccga
ctgttgggcgtccatccagaaagcggcaataaaatccaagccggtttaggtcgttttggt
ccttatatcgtccataagaagggaggcgaagatggcaaagatgattatcgctccattaga
gcctcttctgaggatgatgtgttgacgattcccctagagcgggctttagaaatgttagcc
gaacccaaacgaggtcggggtcgtcgaggcagtaagaagaagccgatgcgggaattagga
gaccatcccaccgacaaggaaccgctgaacatttacgatggtccttatggtccctatatc
aagtacaaacgcaagaacatctcgattcccgatggcgattcagcggaagagttaacctta
gaacgggcagtggagttaatcgctgccaagtcgtcatctcgtaaaacctcaaccgctaaa
cgcaaaaccacctcaaagaaaacctcaaccgctaaacgcaaaaccacctcaaagaaaacc
tccaactcagacagctaa
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