Pseudomonas yamanorum: AK972_0207
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Entry
AK972_0207 CDS
T05821
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK972_0207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pym03019
]
AK972_0207
Enzymes [BR:
pym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AK972_0207
Messenger RNA biogenesis [BR:
pym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AK972_0207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AMW81007
UniProt:
A0A143G9T4
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All DBs
Position
complement(205126..207012)
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AA seq
628 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPAAHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSAVEAEKPEVRERPDVRNPRNNPRGPKGDGPNGGGGGG
GRKDKGKDKGGKDKAATNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDD
DVDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGSAPRTGGQPQGRQNGPRSSNGATTG
TPPAKRSGPRNGAPRDGQARREESRNRRPARDDQPRLSEPAVQNPRGGPAPKIIHKESKS
DRTLTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgcccttccgatcctg
gagcggttgttccccaatggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgacccctacccgcgaactcgccgcccaagtgcatgacagcttcaag
ctgtatgcccgcgacttgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggtgtcgacgtgctggttgcctgcccgggtcgtttg
ctcgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgtatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcgcgc
ctgccggccaaacgccagaacctgctgttctcggccacgttctccaacgacatcaccgct
ttggcgggcaagttgttgcacaacccggagcgtattgaagtcacaccgccgaacaccacg
gtcgagcgtatcgagcagcgcgtattccgcctgccggccgctcacaagcgttcgctgctg
gcccacctgatcaccgccggcgcgtgggaacaggtgttggtcttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgcgatccac
ggcaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggtgaagtg
cgcatcctggtcgccaccgacatcgccgctcgcggcctggacatcgaccaactgccccac
gtggtgaacttcgagctgccaaacgtcgacgaagactacgtgcaccgtatcggccgtacc
ggccgggccggtcgttcgggcgaggccatttccctggtcgcaccggacgaagaaaagctg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgatggcgacctgatgggcttc
gactccagcgccgttgaggctgagaagcctgaagtgcgcgagcgtccggacgtgcgtaac
ccgcgcaacaacccacgcggtccgaaaggcgatggcccgaacggcggcggcggtggtggc
ggtcgtaaagacaagggcaaggacaagggcggcaaggacaaggctgcgaccaatggccgt
ggcgaacgcccggcccgtgagcaaaagccccgtgaaggcaccccggcccgcgaacagcgc
cagccgagccaaccgccacgtgctgctgccgaccgtgctccggacgagttcctggacgac
gacgtagacaacttcggtaaccgcgttgactacgtgccccaggccaagccggcccagggt
cgcggtcgtcgtccgggcgctcccgcccagggcgcaggcgcaggttctgcaccacgcacc
ggcggccagccacaaggtcgccagaacggtccgcgcagcagcaacggcgccaccaccggc
accccgcctgccaagcgcagcggcccgcgcaacggtgcaccccgtgacggccaggcccgt
cgcgaagagtcccgcaaccgtcgcccggcccgtgatgatcaacctcgtctgtcggagcca
gcggtgcaaaacccgcgcggcggcccggcaccgaagatcatccacaaagagtcgaaaagc
gatcgcacgctgacacctgagcagttggatcaactgccgggccgtccacgtggagaaaaa
ccggcgctgctgacccgcaaccgctga
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