Pseudomonas yamanorum: AK972_0729
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Entry
AK972_0729 CDS
T05821
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
pym
Pseudomonas yamanorum
Pathway
pym02020
Two-component system
pym02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AK972_0729
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AK972_0729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pym03021
]
AK972_0729
Transcription machinery [BR:
pym03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AK972_0729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AMW81529
LinkDB
All DBs
Position
complement(779139..780608)
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AA seq
489 aa
AA seq
DB search
MGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNADPLADNIEQ
KPNPDVQEPSYQETAPTVDNLEEGEWNERIPNELPVDTAWEDVYQTSASSLPSNDDDEWD
FTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEILEAFDPEL
DIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKTPWLAEAQRLVTDYIDLLG
SRDYSQLMRRMKLKEDDLRQIIELVQSLNPRPGSQIESSEAEYVVPDVIVRKDNERWLVE
LNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIV
EHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKYFFSSHVS
TSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIA
PSSERKRLM
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgggccagcagctgacgatgacaccgcagctgcaacaggccatccgcctgctccaattg
tcgaccctggacctgcaacaggaaatccaggaggccctggagtccaatccgatgctcgaa
cgccaggaagaaggcgacgacttcgataatgcagacccgctggccgacaacatcgagcaa
aagcccaaccccgacgtacaggaaccctcctaccaggaaaccgcccccacggtggacaac
cttgaggaaggcgaatggaacgaacgcattcccaacgagcttcccgtcgacaccgcctgg
gaagacgtctaccagaccagcgccagcagcctgcccagcaatgatgatgacgagtgggat
ttcaccacccgtacgtccgccggcgagagcctgcagagccatttgctctggcaactgaac
ctggccccgatgtccgataccgatcgcctgatcgctgtgaccctgatcgattgcatcaac
aatcagggctacctggacgagacccttgaggagatcctcgaggccttcgacccggaactg
gacatcgaactcgacgaaattgaagccgtcctgcaccgcatccagcaattcgagcccgcc
ggcatcggcgcccgcaccctcagcgagtgcctgctgctgcaattgcgccaattgccggcc
aagactccatggctggccgaagcgcagcgcttggtcaccgactatatcgacctgctgggc
agccgcgactacagccaactgatgcgccgcatgaagctcaaggaagatgacctgcgccag
atcatcgagctggtacagagcctcaaccctcgccctggatcgcagatcgagtccagtgaa
gccgaatatgtcgtgcccgatgtcatcgtgcgcaaggacaacgagcgctggctggtggag
ctgaaccaggaatcggtaccgcgcctgcgggtcaatccgcaatacgcaggttttgtacgc
cgcgccgacaccagcgccgacaacaccttcatgcgcaaccagttgcaggaagcccgctgg
ttcatcaagagcctgcaaagccgcaacgaaaccctgatgaaagtcgccacccagatcgtc
gagcaccagcgcggcttcctggaatacggcgatgaagcaatgaagccgttggttctgcat
gacatcgccgaggcggtaggcatgcacgaatcaacgatttcccgggtgaccacacaaaaa
ttcatgcataccccacggggtatttatgagctgaaatactttttctccagccacgtcagc
acctccgaaggcggcgaatgctcgtccacggcgatccgcgcgatcatcaaaaaactggtt
gccgcggaaaatcagaaaaagccgttgagtgacagcaagatcgctggtttactggaggca
caaggcattcaggtcgcccgtcgaaccgtcgccaagtaccgcgagtcccttgggatcgcg
ccttccagcgagcgtaaacgtttgatgtga
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