Pseudomonas yamanorum: AK972_0850
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Entry
AK972_0850 CDS
T05821
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK972_0850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pym03019
]
AK972_0850
Enzymes [BR:
pym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AK972_0850
Messenger RNA biogenesis [BR:
pym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AK972_0850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AMW81650
LinkDB
All DBs
Position
complement(911306..912793)
Genome browser
AA seq
495 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPGSSAPAHVQGSRNDGQQPGRTAPVASPKKEPVTTPATVN
VAEEPLADKPRQEPRQEKPRRERAPKPVVIPWKLEDFAVEPQEGKTRFHDFKLAPELMHA
IQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMG
EPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATP
GRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKNERQTLLFSATFT
EDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVF
ANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI
DGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIETLLGRKISCE
TPPTHLLRPVERKRP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggtaaaagcgaggctgagcagctcgcg
ccaggttccagtgcccccgcccatgttcaaggcagccgcaatgacggccagcagcctggc
cggaccgcacctgtagcctcgccaaaaaaagagccggtgaccacacccgccacggttaac
gtcgctgaagaaccactcgccgacaaaccacgccaggagccacgccaggaaaagccgcgc
cgtgaacgcgcgcccaaacctgtggttattccctggaaactggaagacttcgctgtcgaa
ccccaggaaggcaaaacccgctttcatgatttcaagctcgccccggaactgatgcacgcc
atccaggacctgggtttcccgtactgcacgccgatccaggcgcaagtgctgggcttcacc
ctcgccggcaaagacgccatcggtcgcgcccagaccggtaccggcaagaccgccgccttc
ctgatctcgatcatcacccagttgctgcaaaccccgccgccgaaagagcgctatatgggt
gagccgcgcgcactgatcatcgccccgacccgggagctggtggtacagatcgccaaggac
gccgccgacctgaccaaatacaccggcctcaacgtgatgacgtttgtcggtggcatggac
ttcgacaagcagctcaagcacctggaagcgcgccactgcgacatcctggtggccacaccg
ggccgcttgctggacttcaaccagcggggcgacgtgcacctggacatggtcgaagtgatg
gtgctggacgaagccgaccgcatgctcgacatgggtttcatcccacaagtgcgtcagatc
attcgccagaccccgccgaaaaacgaacgccagaccctgctgttctccgcgaccttcacc
gaagacgtgatgaacctcgccaagcaatggaccaccgacccgtccatcgtcgagatcgag
gcgctcaacgttgccagcgagaacgtcgaacagcacatctatgccgtggccggtgccgac
aaatacaagctgctctacaacctggtcaacgacaacggttgggagcgggtcatggtgttt
gccaaccgcaaggacgaagtgcgccgcatcgaagaacgcctggtacgtgatggcgtgaat
gccgcgcaactgtccggcgacgtgccgcagcacaagcgcatcaagaccctggaaggtttc
cgcgaaggcaagattcgcgtgctggtggccaccgacgtggccgggcgcgggattcacatc
gacggcatcagccacgtgatcaacttcaccctgccggaagtgccggatgactacgtgcac
cggattggccgtaccggccgtgccggtgctgcgggggtgtccatcagctttgccggtgaa
gacgattcgtatcagttgccgtcgatcgaaaccttgctgggccgcaagatcagctgcgaa
acgccgccgacgcatttgttgcgccctgtagagcgcaaacgcccttaa
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