Pseudomonas yamanorum: AK972_1360
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Entry
AK972_1360 CDS
T05821
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK972_1360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pym03019
]
AK972_1360
03009 Ribosome biogenesis [BR:
pym03009
]
AK972_1360
Enzymes [BR:
pym01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AK972_1360
Messenger RNA biogenesis [BR:
pym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AK972_1360
Ribosome biogenesis [BR:
pym03009
]
Prokaryotic type
rRNA processing factors
AK972_1360
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AMW82160
LinkDB
All DBs
Position
complement(1444172..1447384)
Genome browser
AA seq
1070 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHVNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPVEAA
APVAAPAALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPAAERPARNEERRNGRQQSR
NRNGRRDEERKPREERAPREDRAPREERQPREAREETPTVAREERAPREERAPRAPRAPR
EDRKPRGEREERVRELREPLDAAPAVAAAAATTAVAEERPARQPREERAPRPPREERQPR
AEQAAPAGEEEELLSNEDQQQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDANGNEIEG
SEETGEATATGEPTGAELAAGLAVTAAVASSVISAPAEAQANEQAEAATAAIQETPVVET
PAVEAPVVEATTPVEAPVVPEVEVAPARHVREVREVREPKPEAEVVAEPAAVVEQQPVVE
AAVEAPVAEPTPEVREVREEQTAFQWTAEPAPVVEEAPAPVAEVVVAPEPVAVVAEPAPV
VEAPVVAEVAAPVVEAAPASALTENGRAPNDPREVRRRRKEAEAAAAAAKAAAEAAPAVA
EVIEAAPAPVTEAVVEHTAPAIDENQRSVEEVVEHHPKALEEEHEPKPLV
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccaacgc
ctctacgacctggacatcgagtccggtgcacgcgagcaaaagaaggccaacatctataaa
ggccggattactcgtatcgaaccaagccttgaggctgcctttgtcgattttggctccgag
cgccatggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagccccagaa
ggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtggaa
aaagaagaacgtggcaacaagggcgcagccctcaccaccttcatcagcctggctggccgc
tacctggtcctgatgccgaacaacccacgtgccggcggtatttcccgtcgcatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggcctgatcgctccggccgacatgggc
ctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgat
tacctgctgcaactctggaccgccatcaaagaagcgtccctggatcgctccgcgccgttc
ctgatctatcaggaaagcaacgtgatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgactttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgaaaccgctttccagcgcgtagtcgaactgcct
tccggcggctccatcgtgatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccaccaagggtagcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gctgaagaaatcgcccgccagttgcgcctgcgtgacatcggcggcctgatcgtgatcgac
ttcatcgacatgacccccgccaagaaccagcgcgccgtggaagagaaagtccgcgaatgc
ctggaagctgaccgtgcccgcgtacaggtcggccgcatctcgcgcttcggcctactggaa
atgtcccgtcagcgcctgcgtccatccctgggtgaaagcagcggcatcgtttgcccgcgt
tgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcactgccgaagtgcgcgcccaggtgccgatcccg
gtggctgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgtgcccgcatcgtcatcctgccgaacgatcacctcgagacgccgcacttcgaagtgcag
cgcctacgggatgacagcccggaagcccacgtcaatcagtccagctacgaaatcgctgct
gccgctgccgaagtggaagaagtccagccagccgccgcgacccgcaccctggttcgccag
gaagccgccgtcaagaccgcgcctgcccgtgccaacgcaccggttccggttgaagctgcc
gcgccggttgccgcgcctgcagccctgcctgagccaagcctgttcaagggcctggtgaag
tcgctggtcagcctgttcgccaccaaggaagagccagtggctccagttgtggtcgagaag
cctgccgctgaacgccctgcacgcaatgaagagcgtcgcaacggtcgccagcagagccgc
aatcgcaacggtcgccgtgacgaagagcgcaagcctcgtgaagaacgtgcgccacgcgaa
gatcgcgccccacgtgaagagcgccagccgcgcgaagcccgtgaagaaacgccaaccgta
gcccgtgaagagcgtgcaccacgggaagaacgtgcgccgcgcgctccacgcgccccgcgt
gaagaccgcaagccacgtggcgagcgtgaagaacgcgtgcgtgaactgcgcgagccgctg
gatgccgctccagccgtagccgctgctgctgccaccactgccgttgctgaagagcgtcca
gctcgtcagccccgtgaagaacgcgcgccacgccctcctcgtgaagagcgtcaaccacgt
gccgagcaagcggctccagccggtgaagaagaagagctgctgtccaacgaagatcagcaa
caggaagacggccaggacaacgccgaaggcgatcgtccacgccgccgctcccgtggccag
cgtcgtcgcagcaaccgtcgtgagcgtcaacgtgatgccaacggcaacgaaatcgaaggc
tcggaagagaccggcgaagctaccgcgactggcgaaccgactggtgccgaactggctgcc
ggcctggccgtgaccgctgctgttgccagctcggtcatcagcgcacctgctgaagcccag
gccaacgagcaagctgaagccgctaccgctgccattcaggaaacccctgttgtagagacg
cctgccgtcgaagcacctgtggttgaagcgacgactccagtcgaagccccggttgttccg
gaagtggaagtagcgccagctcgtcacgtgcgtgaagttcgcgaagttcgcgagcctaag
cctgaagctgaagtggttgccgagcctgccgctgttgttgaacaacagcccgtggttgaa
gccgccgttgaagcaccggttgccgagccgacccctgaagtgcgtgaagttcgcgaagaa
cagaccgccttccagtggactgccgaacctgccccagtggtcgaagaagctccagcgcca
gtcgctgaagtggttgtcgcccctgaacctgtagccgtggttgccgagcctgctccagtg
gttgaagcaccagtggttgccgaagtggcagcaccggtggttgaagccgctccggccagc
gccctgaccgaaaacggccgtgcgccgaacgacccgcgtgaagtgcgtcgccgtcgcaag
gaagctgaagcggccgccgctgctgccaaggccgctgccgaagccgctccagccgtcgct
gaagtgatcgaagcagcccctgctccggtcaccgaagccgtggttgagcacactgcccct
gctatcgacgagaaccaacgttccgttgaagaagtggtagagcaccaccctaaggccctg
gaagaagagcacgagcctaaacccctcgtctga
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