Pseudomonas yamanorum: AK972_2178
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Entry
AK972_2178 CDS
T05821
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pym
Pseudomonas yamanorum
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pym03016
]
AK972_2178
Enzymes [BR:
pym01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AK972_2178
Transfer RNA biogenesis [BR:
pym03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AK972_2178
Prokaryotic type
tRNA splicing ligases
AK972_2178
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
RtcB
RNA_pol_Rpb1_4
FTCD_C
Motif
Other DBs
NCBI-ProteinID:
AMW82978
UniProt:
A0A143GFT5
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All DBs
Position
2420844..2422070
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AA seq
408 aa
AA seq
DB search
MQEKTYQLLEVANGKPIKLWTQGVPVEPEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLHGLRCAIEAAVPHGRTSGRN
GRDKGAWDTVPQQADQAWAALQPRFKTITDKYPKLKNTNNRQHLGTLGSGNHFVEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIQLAQQDMRQHIANLPDRDLAYFEEGSQHFDDYVEAV
GWAQDFARQNREMMMRAVVEATRKVIHKPFEVALEAVNCHHNYVQKERHFGEDILVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTKAKNTFTVADQVRA
TAHVECRKDASVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagaagacctaccaactgctggaagttgccaacggcaagcccatcaaactctgg
acccaaggggtaccggttgagccagaggcgcgccagcaattgatgaacacggcgaagatg
ccgttcattttcaaacaccttgcggtgatgccggatgtgcatctgggcaagggctcgacc
attggcagcgtgatccccaccgtgggcgcgattatcccagccgcggttggcgtggatatc
ggctgcggcatgattgccgctcgtacctcgctgactgccgccgacctgccggataacctc
cacggcctgcgctgcgcgatcgaggcggcggtgccccatggtcgcaccagtggccgtaac
gggcgtgacaagggtgcctgggacactgttccgcagcaggccgaccaggcttgggcggcg
ttgcagccacgcttcaaaacgatcaccgacaagtacccgaaactgaagaacactaacaac
cgccaacacttggggacgctaggatcgggtaaccactttgtcgaagtctgcctggatgaa
gccaaccgggtctggttcatgttgcacagcggctcccgtggcgtcggcaacgctatcggt
aacctgtttatccagttggctcagcaggacatgcgtcagcacatcgccaacctgccggat
cgcgacctggcttacttcgaggaaggcagccagcacttcgatgactatgtggaggcggtc
ggctgggcccaggattttgcccgtcagaaccgcgagatgatgatgcgggcggtggttgag
gcgacgcgcaaggtgatccacaaaccgtttgaagtggcgctggaggcggtgaactgccac
cacaactatgtgcaaaaagagcggcatttcggtgaggacattctggtcactcgcaagggt
gcggtgtcggcaaagaagggtgagctggggattattcccggctcgatgggcgcgaaaagt
ttcatcgtgcgggggctgggtaacgaagagtcgttctgctcctgcagccatggtgctggc
cggaccatgagccgtaccaaggccaaaaacaccttcacggtggccgaccaggttcgggca
acggcccacgtggaatgccgcaaggacgcctcggtaatcgatgagattccgatggcctac
aaggatatcgaccaagtcatgcacgcccagcgcgagctggtggaagtgctgcacaccttg
cgtcaggtggtgtgcgtgaagggataa
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