Pseudomonas yamanorum: AK972_2879
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Entry
AK972_2879 CDS
T05821
Name
(GenBank) type 1 fimbriae anchoring protein FimD
KO
K07347
outer membrane usher protein
Organism
pym
Pseudomonas yamanorum
Pathway
pym02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AK972_2879
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pym02000
]
AK972_2879
02044 Secretion system [BR:
pym02044
]
AK972_2879
02035 Bacterial motility proteins [BR:
pym02035
]
AK972_2879
Transporters [BR:
pym02000
]
Other transporters
Pores ion channels [TC:
1
]
AK972_2879
Secretion system [BR:
pym02044
]
Chaperone-usher system
Type 1 pilus assembly protein
AK972_2879
Bacterial motility proteins [BR:
pym02035
]
Pilus system
Fimbrial proteins
AK972_2879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
Motif
Other DBs
NCBI-ProteinID:
AMW83679
LinkDB
All DBs
Position
complement(3218112..3220640)
Genome browser
AA seq
842 aa
AA seq
DB search
MRARRTEIACAHASDLPVWGRRTLLIVSALLMPYAMAEDVQFDNSFLPAGSSGIDLTLFQ
SGNPVMSGTYRADILVNSNLSMRQDIRIVSDAKGRNPRVCVDTRMLELMGVNVEALSPTA
TAKLATDQCPVINELIDGATALFSTDTQQLDFSIPQAALRRNARGYVSPELWDRGVTAGM
LSYDFNANHNKTLSGTDDSAYLGLNAGLNVGDWRLRHNGSFNWDSLTGSKYQEINTFAQR
DLTGLKSQLTVGEANTSGEIFDTLAYRGVEVATDDRMLPDALRGYAPVVRGIARTNARVT
ISQGGNVLLQTTVAPGAFVIDDLYATGYGGDLQVNVLEADGTQQSFIVPYASVNQLLRPG
TSRFSVTAGETRNNYISKQVELLQGTYQYGLANSLTGYTGGQASDGYLSVLGGIAFGTPI
GAFGVDVTHAQTELRSGDQQGQSLRVSFSENVQSTGSNFSLAAYRFSTSGYFDFNNAVLF
RDAEQNGTDTSQFGQPRSRLTLSLDQSLANWGHLSLSGFTENYWNQPGQDIQYQMGYTTQ
IGRVSLGFNLSRSRSGLAEMQTTELFTVSMPIGFGSSSNTPQFSGRLARDSQGNYSQQAS
VSGSAGEDQQYGYSLTADRDGASQSTDTSVSGQYMGSKARVNGSLSEGDGYSSLSLGGGG
TIVVHPKGVTLTPYTGETMAVISAPGAAGAKVVGYPGLRLDGNGSAVINYLQPYQLNEVA
IDPDGISQDVELSETSQKIAPRAGAVVAVDFATVHGTALLLNVRLKDQSPLPFGATVVDD
AGNPVGTVGQGGQLYARIKDGTQSLLVNWGKESGQTCTLKVPALKEQGQILKGNALCLSA
GS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgcgccggacggaaatcgcttgcgcccacgccagcgatttgccggtttggggt
cgccgaactttactgattgtcagtgcattgttgatgccttacgccatggctgaagacgtg
cagttcgataactcttttctcccggcaggctcgagcggaattgacctgacgctgttccag
agcgggaacccggtgatgtcgggtacgtaccgtgccgacattctggtgaactcgaacctg
agcatgcgtcaggatatccgtatcgtgtccgacgccaagggcaggaaccccagggtctgt
gtcgacacccggatgctggagctgatgggtgtaaacgtagaagctctgtcgccgacggca
actgccaagctggcgactgaccagtgcccggtcatcaatgagctgattgacggtgccacg
gcgctgttttccaccgacacgcagcaactggacttcagcattccgcaggcggccttgcgg
cgtaacgcccgagggtacgtcagcccagaattatgggaccgcggggtgaccgcagggatg
ctcagctatgacttcaacgccaaccacaacaaaaccctttcaggcactgacgattctgca
tatctcggcttgaacgcggggctgaacgtgggtgactggcggttgcggcacaatggttcg
ttcaattgggacagcctgactggcagcaaataccaggaaatcaacacctttgcccaacgc
gacctgacaggcttgaaaagccagctgacggtaggcgaagctaacaccagcggcgagatc
ttcgacaccctggcctaccgtggcgtcgaggtggcgaccgatgaccgcatgctgccggat
gcgctgcgcggttatgcgcccgtggtgcgcggtatcgctcgcaccaacgcgcgggtcacc
atcagccagggcggcaatgtcttgctgcagaccacggtggcgcccggcgcctttgtcatc
gatgacttgtatgccaccggctatggcggcgacctgcaagtgaacgtgctggaagccgac
ggtacccagcaaagcttcatcgtgccttacgcctcggtcaaccagttgctgcgtcctggc
acctcacgtttcagcgtgacagccggtgaaacccgcaataactacatcagtaaacaggtt
gagctgctgcaaggcacttaccagtacggcctggccaactcgctgaccggttataccggt
ggccaggccagcgatggttacctgtcggtgctgggcggtattgcatttggcacacccatc
ggcgccttcggggttgacgtgacccatgcccagaccgaactgcgctccggtgaccagcag
gggcagagcctgcgcgtgtctttcagtgagaatgtccaaagcaccggcagcaacttctcc
ctggcggcttatcgtttttccaccagcggttacttcgatttcaacaacgccgtgctgttc
agggatgcggaacagaacggtaccgacaccagccagtttggccaaccgcgcagtcgcctg
accctgtccctcgaccaaagcctggccaactgggggcatttgtcgttgagcgggtttacc
gagaactactggaaccagccgggccaggatatccagtaccagatgggctacaccacacag
atcgggcgggtaagcctgggcttcaacctcagtcgcagccgctccggcctggccgagatg
caaaccactgaattgtttaccgtgagtatgccgatcgggttcgggtcctcaagcaataca
ccgcagttctcgggccgtttggcgcgcgacagccagggtaactacagccagcaggcgagc
gtgagcggcagtgccggtgaagatcagcaatacggctacagcctgacggcagaccgtgat
ggcgcgagccagtcgaccgacacttcggtcagcggccaatacatgggctccaaagcccgg
gtcaacggttccctcagcgaaggcgatggctacagcagcctgtccctgggtggtggcggc
acgattgtggtccatccaaaaggtgtgacgttgacgccttacaccggtgaaaccatggcg
gtaatcagcgcccccggtgcggccggcgcgaaggtggtgggttatccaggcctgcggctc
gatggcaacggttcggcggtgatcaactatctgcagccatatcagttgaacgaggtcgct
atcgacccggacggtatatcccaggacgtcgagctgagcgaaaccagccagaagatcgcc
ccccgggcgggtgccgtggtagcggtggacttcgccacggtgcacgggacggccttgttg
ttgaacgtgcgcttgaaggaccagagtccgttgccgttcggtgccaccgtggtggatgac
gcaggtaacccggtaggcactgtagggcagggcgggcaactgtatgcacgtatcaaggac
ggcacacaaagcctgctggtcaattggggtaaagagagcggtcagacctgcacgctgaaa
gtgccggcccttaaagagcagggtcagatattgaagggcaacgcgctgtgcctgagtgct
gggtcatga
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