Pseudomonas yamanorum: AK972_3048
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Entry
AK972_3048 CDS
T05821
Name
(GenBank) Hypothetical protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pym
Pseudomonas yamanorum
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pym03032
]
AK972_3048
03400 DNA repair and recombination proteins [BR:
pym03400
]
AK972_3048
Enzymes [BR:
pym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AK972_3048
DNA replication proteins [BR:
pym03032
]
Prokaryotic type
DNA Topoisomerases
AK972_3048
DNA repair and recombination proteins [BR:
pym03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AK972_3048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AMW83848
LinkDB
All DBs
Position
3411687..3412715
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AA seq
342 aa
AA seq
DB search
MPDPALLADLPRDLHYVDDTQPGISRKKLRGKFQYFKADGTRITDADEIKRINALAVPPA
YTDVWICADPRGHLQATGRDARGRKQYRYHQRWREVRDTDKYSRLQQFGSALPKLRKQLE
AQIAAPGFNREKVLATVVMLLDATLIRVGNTQYARDNRSYGLTTLRTRHVDIKGSEILFQ
FRGKSGIEHQITVKDRRLATVIKRCLELPGQNLFQYLDENGERHTVSSTDVNAYLHTLTG
ADFTAKDYRTWAGSALALAVLRELEWQPESDAKKHVVEMVKNVAKQLGNTPAVCRKCYIH
PAVLEHFSLGELAKLPKPRVRKGLKAEEVGLAMFLEQLAERL
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatcctgcgttgcttgccgacctgccccgcgacctgcattacgtcgacgatacc
cagcccgggatctcccggaaaaagctgcggggcaaattccagtacttcaaggccgacggc
acacgcataaccgatgccgacgaaatcaaacgcatcaacgccctcgcggtgccgccggcc
tataccgatgtgtggatctgcgccgacccgcgcggccacctgcaagcgaccggccgtgat
gcccgggggcgcaagcagtaccgttatcaccaacgctggcgtgaggtgcgtgacaccgac
aagtattcccggctgcaacagttcggcagcgcgttgcccaagctgcgcaagcagttggaa
gcgcagatcgcggcgcccgggttcaatcgggagaaggtcctggccacggtggtgatgctg
ctcgacgccacgctgatccgcgtcggcaacactcagtacgctcgggacaatcgctcctac
ggcctgaccaccctgcgcacccgccatgtggacatcaagggcagcgagatcctgttccag
tttcgcggcaagagcggcatcgagcaccagatcaccgtcaaggatcggcgcctggccacg
gtgatcaagcgttgcctggaattgccggggcagaacctgttccagtacctggacgagaac
ggcgagcgccatacggtcagctccactgacgtgaatgcctacctgcataccctgacgggt
gcggattttaccgccaaggattaccgcacctgggccggcagtgccctggcgctggcggta
ttgcgcgagcttgaatggcagccggagtccgacgccaagaagcatgtggtggagatggtc
aagaatgtcgccaagcaactgggcaacaccccggcggtatgccgcaagtgctacatccac
ccggccgtgctggagcatttcagcctgggcgagctggcaaagctgcccaagccacgggtg
cgcaaaggcctgaaagccgaggaagtggggttggcgatgtttctggagcaactggcagaa
cgcctgtga
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