Pseudomonas yamanorum: AK972_3236
Help
Entry
AK972_3236 CDS
T05821
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pym
Pseudomonas yamanorum
Pathway
pym02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AK972_3236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pym03021
]
AK972_3236
Transcription machinery [BR:
pym03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AK972_3236
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_28
PhyR_sigma-like
NirdL-like_HTH
GerE
Motif
Other DBs
NCBI-ProteinID:
AMW84036
UniProt:
A0ABU1CPU8
LinkDB
All DBs
Position
3617254..3617784
Genome browser
AA seq
176 aa
AA seq
DB search
MDTVSTSPTSFSDLYGNHHSWLLGLLRRRLSNRWDAADLAHDTFIRVLKRPPADTDETRE
RSYLATIARGLCIDHWRRRQLEQAWLQSLADRPQALQPSPEQRAIIVETLYEVDAMLARL
PHKVREAFLLAQLHGMPYKQIGEQLGVGERMVKKYLAQALLHCAVLEAELDGMLVE
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atggatactgtgtcgacctcgcccacctcattcagcgacctctacggcaatcaccattcc
tggctgctggggctgctgcgcaggcgcctgagcaatcgctgggatgcggcggacctggcc
cacgacacgtttatccgggtgctcaagcgtccgcctgccgacaccgatgagacgcgggag
cgctcctacttggccaccatcgcccgggggctgtgcatcgatcactggcgccggcgccaa
ctggaacaggcgtggctgcaaagcctcgcggatcggccgcaagccctgcaaccttcgccg
gagcaacgggcgatcatcgtcgaaaccctctacgaagtggacgccatgctcgcccgactg
ccccacaaggtgcgcgaagcgtttttactggcacagttgcacggcatgccctacaagcag
atcggtgagcaactcggggtgggcgaacggatggtgaaaaaatacctggcccaggcgctg
ctgcattgcgcggtgctcgaagcggaactggacgggatgctcgtggagtga
DBGET
integrated database retrieval system
