Pseudomonas yamanorum: AK972_3553
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Entry
AK972_3553 CDS
T05821
Name
(GenBank) Exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pym
Pseudomonas yamanorum
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pym03400
]
AK972_3553
DNA repair and recombination proteins [BR:
pym03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AK972_3553
Archaeal homologous recombinant proteins
AK972_3553
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Motif
Other DBs
NCBI-ProteinID:
AMW84353
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Position
3939075..3940316
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AA seq
413 aa
AA seq
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MRLFHTSDWHLGQNLHGQERDFEHACFLDWLLGQLGLHRPDVLLIAGDIFDTVNPPLKAQ
ERLYDFIISAHEQNPALTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDV
ERLLIPLPSADGEIAGWCLALPFLRPAEVTGAQLGDDYLRGIGQVHEWLIAAANAKRQPG
QALVAISHAHMAGGSVSEDSERSLIIGNAEALPASLFDASVSYVALGHLHKPQRVNGEER
IRYCGSPIPLSFSEIGYQHQILDVQLDGETLVSVESRLIPRSVNLQRLEAAPLADILKQL
AELPDIDLLAETQRQPWLEVRVRLDEPQPDLRQQVENALQGKAVRLVRIAAEYAGSGGRE
DSQEDRLIELDQLTPQELFSRAWQESYGSEVDEQTLKDFAVLLQEVQQEGEQP
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtctgtttcacacctccgactggcaccttgggcaaaacctgcacggccaggaacgc
gacttcgaacacgcctgcttcctcgactggctgctgggccagttgggcctgcatcgcccg
gatgtgctgctgatcgccggcgatattttcgacacggtcaacccgccgctcaaggcccag
gagcggctgtatgacttcatcatcagcgcccacgagcaaaaccccgcactgaccatcgtg
atgatcgccggcaaccacgactccggctcgcgcatcgaactgccggcgccgttgatgcgc
cgcctgcgtacccacgccctgggccgggtgctgtggctggatgacgggcaattggatgtc
gaacgcctgctgattccgttgcccagtgccgacggtgaaatcgccggctggtgcctggcc
ctgcccttcctgcgcccggccgaagtgaccggcgcgcaattgggggacgattacctgcgg
ggcatcggccaggttcatgaatggctcatcgccgctgccaacgccaagcgccaaccgggc
caggcactggttgccatcagccatgcgcacatggccggcggttcggtgtcggaagattcc
gagcgcagcctgatcatcggcaatgccgaagcgctgcccgctagcctgtttgatgccagc
gtcagctacgtggccctcggccatttgcacaaaccccagcgggtgaatggcgaggagcgt
attcgctactgcggctcgccgattccactgtcgttttcggaaatcggctaccagcaccag
atcctcgatgtgcaactggacggcgaaaccctggtcagcgtcgaatcccgcctgatcccg
cgctcggtcaacttgcaacgtctggaagccgcccccctggccgacatcctcaagcaactg
gccgagctgcccgacatcgacctgctggcggaaacccagcgccaaccgtggctggaagtg
cgggtgcgcctcgacgagccgcaacccgacctgcgccagcaagtggaaaacgccctgcaa
ggcaaggccgtgcgcctggtgcgcatcgccgctgaatacgcaggcagcggaggccgtgaa
gacagccaggaagaccgcctgatcgaactcgaccagctcacgccccaggaattgttcagc
cgcgcctggcaggaaagttacggcagtgaagtggacgaacagaccctgaaggacttcgcc
gtgctgctccaggaagtgcaacaggagggcgaacagccatga
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