Pseudomonas yamanorum: AK972_3610
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Entry
AK972_3610 CDS
T05821
Name
(GenBank) Xylose activator XylR (AraC family)
KO
K02529
LacI family transcriptional regulator, galactose operon repressor
Organism
pym
Pseudomonas yamanorum
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pym03000
]
AK972_3610
Transcription factors [BR:
pym03000
]
Prokaryotic type
Helix-turn-helix
LacI family
AK972_3610
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PBP1_XylR
Peripla_BP_3
HTH_18
HTH_AraC
Peripla_BP_4
Peripla_BP_1
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AMW84410
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Position
complement(3996552..3997763)
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AA seq
403 aa
AA seq
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MKTVPPVHRIALLFNGNKIYDRGIITGIGNYLSSTRVSWDLFLEEDFVCRLKGIERWHGD
GIIADFDDPAMGPALAGVHVPVVAVGGSYDDERAYPRHIPYVATDNFALIKLAYEHLIEA
GLTRFACFSLPQADINRWAQEREKAFRRLLERDGLPVEVYRGLGTSAPLWDSAVEQQIAW
LHSLPKPIGIIAVSDARARQLLQACLTAGIPVPEQVALIGIDNDPLTRTLTRVPLSSVIQ
GTEKMGRTAARLLHQMLHGMPSAGSQILVPPEAVNVQTSSLHQPLGHPYVMQALHFIRQY
ACQGIKTAQVANYVGVSRSSLEAHFRSELNRSVHDEILRFKLAAAVASLENTGAGIADIA
YDCGFKSAQYLHTVFKREFGCTPREYQVGQLERDSNDVISLSP
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaccgtcccgcctgtgcaccggattgccctgctgttcaacggcaacaagatctac
gatcgcggcatcatcaccgggatcggcaactacttgagcagcacgcgggtgtcgtgggat
ttgtttctggaggaggacttcgtctgccggctcaagggcatcgagcgctggcatggcgac
gggatcattgccgacttcgacgacccggcgatgggccccgcgttggcgggtgtgcatgtg
ccggtggtggcggtgggcggctcctacgatgatgagcgggcttacccacggcatattccg
tacgtggccaccgacaatttcgccttgatcaagttggcgtatgaacacctgatcgaagcc
gggttgacgcgttttgcctgtttcagcctgccgcaagctgatatcaaccgctgggcccag
gagcgcgaaaaagccttccgccggttgctggagcgcgatggcttgcccgtggaggtgtat
cgcgggctgggcaccagcgcaccgctgtgggactcggcggtggaacagcagatcgcctgg
ttgcacagcctgcccaagcccatcggcatcattgcagtcagcgacgcccgtgcccggcag
ttgctgcaagcctgcctcaccgccggcatcccggtgccggagcaagtggcactgatcggc
atcgacaatgacccgctgacccgcaccctgacccgcgtaccactgagctcggtgatccag
ggcaccgaaaaaatgggccgcactgccgcgcgcttgctgcaccagatgttgcacggcatg
ccctcggccggcagccagatcctggtgccgccggaggcagtcaacgtgcagacctcaagc
ctgcatcaacccctcggccatccctacgtgatgcaggcgctgcacttcattcgccagtac
gcctgccagggcatcaagaccgcccaggtcgccaactacgtcggtgtgtcgcggtcgtcc
ctggaagcgcattttcgcagcgaactgaaccgcagcgtccacgacgaaatcctgcgcttc
aaactcgcggcggcggtggcgagcctggaaaataccggggcggggattgctgatattgcc
tacgactgcgggttcaaatcggcgcagtacctgcacacggtattcaagcgcgagttcggg
tgtacgccgagggagtatcaggtggggcagctcgaacgcgattcgaacgatgtcatttct
ttgtcgccttga
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