Pseudomonas yamanorum: AK972_4535
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Entry
AK972_4535 CDS
T05821
Name
(GenBank) Uracil-DNA glycosylase, family 1
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AK972_4535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pym03400
]
AK972_4535
Enzymes [BR:
pym01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
AK972_4535
DNA repair and recombination proteins [BR:
pym03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AK972_4535
Prokaryotic type
AK972_4535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AMW85335
UniProt:
A0A143GM37
LinkDB
All DBs
Position
complement(5007124..5007816)
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AA seq
230 aa
AA seq
DB search
MTSDDRIKLEPSWKHALRDEFDQPYMAQLREFLRQEHAAGKEIYPPGPMIFNALNSTPLD
KVKVVILGQDPYHGPGQAHGLCFSVQPGVPAPPSLVNIYKELKRDLNIDIPNHGYLQSWA
DQGVLMINTTMTVERANANAHAGKGWQFFTDRIIEVVSEHQPHLVFLLWGAHAQGKQKLI
DATKHLVLTSVHPSPLSAYRGFIGCGHFSRANKFLEQNGETPIEWRLPPV
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgacctccgacgaccgtatcaaactcgaacccagctggaaacacgccctgcgtgacgag
ttcgaccagccgtacatggcccagttgcgggaattcctgcgccaggagcacgcggccggc
aaggaaatctacccgccggggccgatgatcttcaacgcgctcaactcgacgccgttggac
aaggtcaaggtggtgatcctcggccaggacccgtatcacggcccgggccaggcccacggc
ttgtgcttctcggtacagccgggcgtgccggcgccgccgtcgctggtcaatatctataaa
gaactcaagcgcgacctgaacatcgacatccccaaccacggctacctgcaaagctgggct
gaccagggcgtgctgatgatcaacaccaccatgaccgtggagcgtgcgaatgccaacgcc
catgcgggcaagggctggcagttctttaccgatcggattattgaagtggtgagcgagcat
cagccgcacctggtgttcttgctctggggcgcccatgcgcagggcaagcagaagttgatc
gacgccaccaagcacctggtgctgacgtcggtgcatccgtcgccgctgtcggcgtatcga
gggtttattggctgcgggcatttcagtcgcgccaacaagtttcttgagcagaatggcgag
acgccgattgagtggcgattgccgccggtttga
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