Pseudomonas yamanorum: AK972_4630
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Entry
AK972_4630 CDS
T05821
Name
(GenBank) RNA polymerase associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pym
Pseudomonas yamanorum
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pym03021
]
AK972_4630
Transcription machinery [BR:
pym03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AK972_4630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMW85430
UniProt:
A0A143GMU8
LinkDB
All DBs
Position
5107257..5110103
Genome browser
AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG
DTITHFEGWKMTVQEVDDVDGLLVYHGLNGQNEQVTLPETQLSNFIQFRLASDRLFAGQI
DPLPWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA
TNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEEKASPEYSLVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLHAFRAESENYRPVAEAVQELLDK
GRLSPAAHKTIQGFLGDEGEALLTAVNDGDAEASARLVRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHAYPLPCPDEYLELPLGEHAELYPEVSFQSQPDVDEEQRWWRFDPRVEWLIDQ
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPYLETSP
QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLENADDGEWQALIDEARAERERLE
AELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFTLPIYMETLFDAFGIDSEDHSENAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSGRVSF
LTLNDQLESVPRASANKFVQAQRDQLTPRINAGEEKIAPRHAERVAEAQRRLAADTDEEL
ARLTALQAVNPTVRDSELVALRQQREQGLAMLDKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagcagagctgggg
ttaggcaccgttctggcacaggacggccgcttgttaaccgtgctctatccggccactggc
gacacccgccagtatgcgctacggaatgcgcccctcactcgcgtgaggttttcgccgggt
gacaccatcacccatttcgaaggctggaaaatgaccgtgcaagaggtcgacgacgtcgac
ggcctgctggtctaccacggcctcaatgggcagaacgagcaggtcaccctgccggaaacc
caactctcgaacttcatccagttccgtctggccagcgaccgtctgttcgccggccagatc
gacccgctgccctggttctccctgcgctatcacaccctggaacacaccagccgccagttg
cagtcctcgctttgggggctgggcggcgtgcgtgcgcaaccgatcgcgcaccaactgcac
atcgcccgtgaagttgccgaccgtatcgcgccgcgtgttctgctggcggacgaagtgggc
ctgggcaagaccatcgaagccggcctggtgatccatcgccagttgctgtccggtcgcgcc
aaccgcgtgctgatcctggtgccggaaaacctccagcaccagtggctggtggaaatgcgc
cgccgcttcaacctgcaggtggcgctgttcgacgaagagcgctttatcgaaagcgatgcc
accaacccgttcgaagacacccagctcgcgctggtggccctggaatggctggtggacgac
gagaaggcccaggacgcgttgttcgccgccggctgggacctgctggtggtcgacgaagct
caccacctagtctggcacgaagaaaaagccagccccgaatactcgctggtggaacaactg
gccgaagtgattcccggtgtactgctgctcactgcaacccctgagcaattgggccaggac
agccacttcgcgcgcctgcgcctgctggacccgaatcgtttccacgacctgcacgccttc
cgcgccgagagcgaaaactatcgcccggtggccgaagccgttcaggagctgctggacaag
ggccgcctctcgcccgccgcccacaagaccatccagggtttcctcggcgacgaaggcgaa
gcgctgctgaccgccgtcaacgatggcgatgccgaagccagcgcccgtttggtacgcgaa
ctgctcgaccgccacggcaccggccgcgtgctgttccgcaacacccgcgccgccgtacaa
ggcttcccggagcgcaagctgcacgcctacccgctgccgtgcccggacgaatacctcgaa
ctgcccctgggcgaacacgccgagctgtacccggaagtcagcttccagtcccagccggat
gtggatgaagaacaacgctggtggcgtttcgacccgcgcgtcgagtggctgatcgatcag
ctgaaaatgctcaagcgcaccaaagtcctggtgatctgcgcccacgccgaaaccgccatg
gacctggaagacgccctgcgcgtgcgttccggtatcccggccacggtgttccacgagggc
atgaacatcctcgagcgtgaccgcgccgctgcttactttgcggatgaagagtttggcgcc
caggtgctgatctgctcggaaatcggcagtgaaggccgcaacttccagttctcccaccac
ttggtgctgttcgacctgccgtcccacccggatctgctggaacagcggatcggccgtctg
gaccggatcggccagaagcatgtgatcgaactgcatgtgccgtacctggaaaccagcccg
caagagcgcctgttccagtggtaccacgaagcgctgaacgcattcctcaacacctgcccg
accggcaacgccttgcagcaccagttcggcccgcgcctgctgccgctgctggaaaacgcc
gacgacggcgagtggcaagcgctgatcgacgaagcccgtgccgagcgcgagcgcctcgaa
gccgaactgcacaccggtcgcgaccgtttgctggagctcaactccggcggtgccggtgaa
ggtgatgcgctggtggaagccatcctcgagcaagacgaccagttcaccctgccgatctac
atggaaaccctgttcgacgccttcggcatcgacagcgaagaccattcggaaaacgcgctg
atcctcaagcccagcgaaaaaatgctcgacgccagcttccccctgggcgacgacgaaggc
gtgaccatcacctacgaccgcaaccaggcgctgtcccgcgaagacatgcagttcatcacc
tgggaacatccgatggtgcagggcggcatggatctggtgctgtccggttccatgggcaac
accgccgtggcgctgatcaagaacaaggcgctcaagccgggcaccgtgttgctggaactg
ctctacgtcagcgaagtggttgccccgcgttcgctgcaattgggccgttacctgccgccg
gctgcgctgcgttgcctgctggatgccaacggcaatgacctgtcgggccgcgtgtcattc
ctgaccttgaacgaccagctggaaagcgtgccccgggccagcgccaacaagttcgtccag
gcccagcgcgaccagctgacgccacggatcaacgccggcgaagagaagatcgccccgcgt
cacgcagagcgtgtggccgaggctcaacgtcgcctggcggcggacaccgacgaagaactg
gcacgcctgaccgcgttgcaagcggtcaacccgaccgtgcgtgacagcgaactggttgcc
ctgcgccaacaacgcgagcaaggcctggccatgctcgacaaggcggcgctgcgactggaa
gcgattcgggtattggtcgcgggctaa
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