Pseudomonas yamanorum: AK972_5133
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Entry
AK972_5133 CDS
T05821
Name
(GenBank) Poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK972_5133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pym03019
]
AK972_5133
Enzymes [BR:
pym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
AK972_5133
Messenger RNA biogenesis [BR:
pym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AK972_5133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AMW85933
LinkDB
All DBs
Position
5654946..5656352
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AA seq
468 aa
AA seq
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MLKKLFQSFRSPLRRTQHKRSTPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVG
GCVRDMLLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAN
HPQNDEEEDTNQSSRNESGRILRDNVYGTLEEDAQRRDFTINALYYDPVSERILDYANGV
HDIRNNLLRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRDLAPMLREIPSA
RLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEALEYNPTYTHTLISEALINTDLR
IKQNKPVTPAFLFAALLWPALPKRVMRLQDRGMPAIPAMQEAAHELIAEQCQRIAIPKRF
TMPIREIWDMQERLPRRSGKRADLLLDNPRFRAGYDFLLLRESAGEQTDGLGEWWTDYQD
ANDSQRREMIKELSSKGEATGDGPKKRRRSSGSKRKRSAGDASSASGE
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagaagttgttccagtcattccgttctcccttgcgtcgtacgcaacacaaacgc
agcacgcctgaagtgctcaatagcagccagcattcgctgcaacgcgcccagttcagccgt
tatgcggtgaacatcgtcgaacgtttgcagaacgccggctaccaggcttacctggttggc
ggttgcgtgcgcgacatgttgctcaacatcactcccaaggatttcgacgtcgccaccagt
gccacgccggaacaagtgcgtgccgaattccgcaatgcgcggatcattggtcggcgcttc
aagttggtgcatatccactttggtcgcgagatcatcgaggtcgcgaccttccgcgccaac
cacccgcaaaacgatgaagaagaagacaccaaccagtcttcccgcaatgaaagcggacgc
atcctgcgggacaacgtctacggcaccctggaagaagacgcgcaacgccgcgacttcacc
atcaatgccttgtattacgacccggtcagcgagcgcatcctcgactacgccaatggcgta
cacgacattcgcaacaacctgctgcgcctgatcggcgatccgacgcaacgctaccaggaa
gacccggtgcgcatgctgcgggccgtacgtttcgcggccaagctgaacttcgggatcgag
aagcacacggcggcaccgatccgcgacctggcgccgatgctgcgggaaatcccgtcggca
cgcctgttcgaagaggtgctcaagttgttcctctccggctatgccgccgacaccttcgaa
atgctggttgacctgcagttgttcgacccattgttcccggccagcgccgaggcactggag
tacaacccgacctacacccacacgctgatcagcgaagccttgattaacaccgacctgcgc
atcaagcagaacaaaccggtcaccccggcgttcctctttgccgccctgttgtggcctgcg
ctgccgaagcgcgtgatgcgcttgcaggatcgcggcatgccggcaattccggccatgcag
gaagcggctcatgagctgatcgccgagcaatgccagcgcatcgccatcccgaaacgcttc
accatgccgatccgtgagatctgggacatgcaggagcgcctgccacgccgcagcggcaaa
cgtgccgacctgttgctggacaacccgcgcttccgtgccggctatgacttcctgctgctg
cgtgaaagcgccggcgagcagaccgacggccttggcgagtggtggaccgactaccaggac
gccaacgacagccagcgccgcgagatgatcaaagagctcagcagcaaaggcgaagccacc
ggcgatggcccgaaaaaacgtcgccgcagcagtggcagcaagcgcaaacgtagcgctggc
gacgcttcgagtgcgtctggcgagtaa
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