Pseudomonas yamanorum: AK972_5143
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Entry
AK972_5143 CDS
T05821
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK972_5143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pym03019
]
AK972_5143
03016 Transfer RNA biogenesis [BR:
pym03016
]
AK972_5143
Enzymes [BR:
pym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AK972_5143
Messenger RNA biogenesis [BR:
pym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AK972_5143
Transfer RNA biogenesis [BR:
pym03016
]
Prokaryotic type
tRNA degradation factors
AK972_5143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AMW85943
LinkDB
All DBs
Position
complement(5668780..5670798)
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AA seq
672 aa
AA seq
DB search
MLVTVDDDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKET
LTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFDGPI
GAARVAFHESTGYLLNPTYEQQKASSLDMVVAGTSEAVLMVESEAKELTEDQMLGAVLFA
HDEFQVVINAVKELAAEAAKPTWTWAPQPEATALLGAIRSEFGTAISDAYTITIKADRYA
RLGELKDQVVAKLSGEEGQPSSSEVKAAFGEIEYRTVRENIVNGKPRIDGRDTRTVRPLN
IEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVG
ECGRMGGAGRREIGHGRLARRSIAAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASL
ALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTAKGVTALQMD
IKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSENAPTMIAMKIDTDKIRDV
IGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAARQRVLGITAEAEIGKIYVGK
VERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLS
IKDVAAAKASGV
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgctggtcaccgttgacgacgacgtcaccgtattggtgaccgttgtaggcgccaagacc
gctgatccaagcaaaggcttcttccctctttccgttcactaccaggaaaagacttacgct
gccggtaagatccctggtggtttcttcaagcgcgaaggccgtccttccgagaaagaaacc
ctgacttcccgactgatcgatcgtccgatccgtccgctgttcccagaaggcttcatgaac
gaagtgcaggttgtctgcaccgtcgtttccaccagcaagaagaccgatccggacatcgct
gcgatgatcggtacctcggctgccctggccatctccggtattcctttcgatggcccgatc
ggcgctgcccgcgttgcgttccacgaaagcaccggctacctgctgaacccgacttacgaa
caacagaaagcttcgagcctggacatggtcgttgccggtacttcggaagccgttctgatg
gttgaatcggaagccaaagagctgaccgaagaccagatgctgggcgcggtactgtttgct
cacgacgagttccaggttgtgatcaacgctgttaaagaactggccgctgaagctgccaag
ccaacctggacctgggctcctcagccagaagctaccgcactgctgggcgctatccgctcc
gagttcggcactgctatctccgacgcctacaccatcaccatcaaggccgaccgttacgct
cgcctgggtgagttgaaggaccaggttgttgccaagctgtccggtgaagaaggccagcct
tcttccagcgaagtcaaagcagccttcggtgaaatcgaataccgcaccgttcgcgaaaac
atcgttaacggcaagcctcgtatcgacggtcgcgacactcgtactgtacgtccgctgaac
atcgaagtcggcgttctgccaaaaacccacggttcggctctgttcacccgtggcgaaacc
caggctctggttgttgcaacactgggtactgcccgtgatgcacagctgctggacaccctg
gaaggcgagaaaaaagacccgttcatgctgcactacaacttccctccgttctcggtcggt
gagtgtggccgcatgggtggcgctggtcgtcgcgaaatcggtcacggccgtctggcccgt
cgttcgattgcagccatgctgcctgccgccgacgtgttcccgtacaccattcgtgttgtg
tcggaaatcaccgagtccaacggttccagctccatggcttcggtctgcggtgcttccctg
gctctgatggacgccggtgtaccgatgaaggcaccggttgccggtatcgccatgggtctg
gttaaagagggcgagaagttcgccatcctgaccgacatcctgggtgacgaagaccacctc
ggcgacatggacttcaaagtagccggtaccgctaaaggtgttaccgcgctgcagatggac
atcaagatcaaaggcatcaccgaggaaatcatggagatcgctctgggccaagccctggaa
gcgcgcctgaacatcctcggtcagatgaaccagatcattggccagtcccgcaccgaactg
tcggaaaatgctccgaccatgatcgcgatgaaaatcgacaccgacaaaatccgtgatgtt
atcggtaaaggcggtgcgaccattcgtgcgatctgtgaagagaccaaggcttcgatcgac
atcgaagacgatggctcgatcaagatcttcggcgaaaccaaggaagcggctgaagcggca
cgtcagcgcgtcctgggtatcactgctgaggccgagatcggcaagatctacgtcggtaag
gttgagcgcatcgtcgacttcggcgcattcgtcaacatcctgcctggcaaggacggtctg
gttcacatctccatgctgagcgatgctcgcgttgagaaagtgaccgacatcctgaaagaa
ggccaggaagtggaagtgctggtactggacgtggacaaccgcggccgtatcaagctgtcc
atcaaggacgtagcagcagccaaggcttcgggcgtttaa
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