Pseudomonas yamanorum: AK972_5229
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Entry
AK972_5229 CDS
T05821
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AK972_5229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pym03400
]
AK972_5229
Enzymes [BR:
pym01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AK972_5229
DNA repair and recombination proteins [BR:
pym03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AK972_5229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_12
DUF5631
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AMW86029
LinkDB
All DBs
Position
complement(5780928..5784605)
Genome browser
AA seq
1225 aa
AA seq
DB search
MSGTKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESGFGRELLPPQILV
VTFTDAATKELRERIRIRLAEAARFFREEIEEPDALIAELRDQYSPEQWPGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDD
ALNWVRNNWGGPAALMPRVRALFNSERPMDETRDPAELINECLQERRQALVALKAPWQQW
AEELRNICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADESLEQLDIGTGFTRLTPDGM
AEAWKGEPPHHAGIDAMASLKASLDALPTPDAAVLQHAAGWVGKRFEEEKRRRAEMGFDD
MLIRLNAALQADGGERLASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLF
LIGDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAEKGRG
AFLFREPDGTNPVPFQSVLSQGRKEQLQVNGQTLPALNLWHLPTDQPISNVLYRQQLAAT
CASQIVALLNGGQQGTAGFLSKDGSFKGVLPSDIAILVRDGKEAQAVRSELAARGVRSVY
LSDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLPELERLNQDELAWEK
RVMQFRDYRTIWRTQGVLPMLRRLLHDFKLPQTLITRSDGERVLTNLLHLSELLQQAAAE
LDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSA
KPVDGSRLPLHYHDANGKSQVSLKPTAELIAQADDERLAEDLRLFYVALTRAKHACWLGI
ADLKRGNNNSSVLRLSALGYLLGGGASLGESARLTRWLLDLQEGCPALHYAEMPEADAVI
FHPPRNEATLLAPLLPKRKAAENWWIASYSALRIGESMSAASLEAPESPQAQKLFDDERL
DPDAPREVPASGGDIHRFPRGPNPGTFLHGLLEWAGGEGFNVTPEAIEDAVARRCNRRGW
EGWIGTLSGWLGHLLQARLPLGNGQMALNELQHYQIEMEFWFASHKVDVLALDKLVCQHT
HNGVSRVAAEPVLLNGMFKGFIDLTFEHEGRYYVADYKSNWLGPDDSAYTQQAMELSILD
HRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGTHSASQGAYFTRPPRELIE
GLDLLFQGKPLPPKAEPAWEQGELL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacaaaacccctggccttggcgttcccgcttaaaggcagccaactgatcgag
gccagtgccggcacgggcaagacgttcaccatctcggcgctctacctgcgtctggtactc
ggccacggcggtgacgaatcgggcttcggccgcgagttgctgccgccgcaaattctcgtc
gtgaccttcaccgatgccgccaccaaagagctacgcgaacgtatccgtatccgcctggcc
gaagccgcgcgttttttccgcgaagaaatcgaagaacccgatgcactgatcgccgaactg
cgcgaccaatacagccccgaacaatggccaggctgcgccaatcgcctggatatcgctgcc
caatggatggacgaagccgccgtctcgaccatccacagttggtgccagcgcatgctgcgc
gaacacgccttcgacagcggcagcctgttcacccagaccctcgaaaccgaccacagcgat
ttgctcggcgaagtgctacgcgactactggcgattgttctgctacccgatgcacgacgac
gcgctgaattgggtgcgcaacaactggggcggcccggcagcgctgatgccacgggtacgc
gcgttgttcaacagcgagcggcccatggatgaaactcgcgaccccgccgagctgatcaac
gaatgcctacaagaacgccgccaagccctcgtcgcgctcaaggcgccctggcaacaatgg
gcagaagagttgcgcaacatttgcctccaggccgtcgctgccaaagccgtcgatggtcgc
aagatgcaagcgcgttacttcgagccctggtttgaaaaaatcagcgcctgggcggctgat
gaatcccttgagcaactggatatcggcaccggcttcacccgcctgacgcccgacggcatg
gccgaagcctggaaaggcgaaccaccgcaccatgcgggtatcgacgccatggccagtctc
aaggccagcctcgacgccctgccaacgcccgatgccgccgtgctgcaacacgccgccggc
tgggtaggaaaacgcttcgaagaagaaaagcgccggcgcgccgaaatgggcttcgacgac
atgctgatccgcctcaacgccgccctgcaggccgacggcggcgaacgcctggccagtgtg
atccgcgagcaattcccggtcgccctgatcgatgaattccaggacaccgacccggtgcaa
tacagcatcttcgacagcatctaccgcatcgaagaaaaccacctcgacagcggcctgttc
ctgatcggcgacccgaagcaggcgatctacgccttccgtggtgccgacatctacacctat
ctgcgcgcacgccaatccaccaccggccgccatcacaccctgggcaccaacttccgttcc
agccatgccatggtcgaggcggtaaaccatgtgttccagcgcgccgaaaaaggccgcggc
gcgttcctgttccgcgaacccgacggtacgaatccggtgccgttccagtcggtattgtct
caaggccgcaaggaacaactgcaggtcaacggtcagacgttgcccgcgctgaacctctgg
cacctgcccaccgaccagccgatctccaacgtgctctaccgccaacagctggccgcgacc
tgcgccagccaaatcgtggcattactcaacggcggccagcaggggactgcgggattcctg
agtaaagacggtagcttcaaaggcgttctgccgtcggacatcgccatcctggtacgcgac
ggcaaggaagctcaagccgtgcgcagtgagttggctgcccgtggcgtgcgcagcgtttac
ctgtctgataaggattcggtgttcgccgcccaggaagcccacgacctgctggcctggctc
aaagcctgcgccgagccggacgtcgagcgcccgctgcgcgccgccttggcctgcgtcacc
ttgaacctgtcactacccgaattggagcgtctgaaccaggacgaactggcgtgggaaaaa
cgcgtgatgcagttccgcgactaccgcacgatctggcgcacccaaggcgtgctgccgatg
ctgcgccgcctgctgcacgacttcaaattgccgcaaaccctgatcacccgcagcgatggc
gagcgggtactgaccaacctgctgcacctctcggaattgctgcaacaggcggccgcggag
ctggacggcgagcaggcattgattcgccatctggccgaacatctcgcgctctccggtcag
gccggtgaagagcagatcctgcgcctggaaagcgatgagcaactggtcaaagtagtgacg
atccacaagtccaagggactggagtacgacctggtcttcctgccgtttatttgctcggca
aagccggtggacggcagccgcttgccattgcattaccacgacgcaaacggcaaatcccaa
gtcagcctcaagcccaccgccgagctgatcgcccaagccgacgacgagcgcctggccgaa
gacctgcgactgttttacgtggcgctgacccgcgccaaacacgcttgctggttggggatc
gcagacctgaagcgcggcaataacaacagctcggtgttgcgcctgtcggccttgggctac
ctgctcggcggcggtgcttcactgggcgaatccgcccgcctgacccgctggctgctcgac
ctgcaggaaggttgcccggcgctgcattacgcagaaatgcccgaagccgatgcggtcata
ttccacccgccgcgcaacgaagccactttgctcgcgccgctgttgcccaaacgcaaggcc
gcagaaaactggtggatcgcgtcctacagcgccctgcgtatcggcgagagcatgagtgct
gcgagccttgaagcgccggagagcccacaagcgcagaagctgttcgacgacgaacgcctc
gacccggatgccccgcgcgaagtgccggcttccggtggagatattcaccgtttcccacgt
gggccaaaccctggcaccttcctccacggcttgctggaatgggcgggcggcgaaggcttc
aacgtgactccggaggccatcgaagatgctgtcgcccgccgctgtaaccggcgtggatgg
gaaggctggatcggtactctcagcggctggctcgggcacctgttgcaagcccggctgccg
ctgggcaacgggcagatggccctcaatgagttgcagcactaccagatcgaaatggaattc
tggtttgccagtcacaaggtcgatgtcctcgcgctcgacaaactggtgtgccagcacact
cacaatggcgtatcccgcgtggccgccgaaccggtgctgctcaacggcatgttcaagggc
tttatcgacttgaccttcgaacacgaaggccgttactacgtggctgactacaaatccaac
tggctcggtccggacgattcggcctacacacaacaggccatggaactgtcgatcctcgat
catcgttacgacctgcaatacgtcctttacctgctggccctgcatcgccagcttaaggct
cgcctgccggattacgactacgaccgccacgtcggtggtgcgttgtacctgttcctgcgg
ggcacccattccgcgagccagggtgcgtatttcacccgtccgccccgggaattgatcgaa
ggcctggacctgctgttccaaggcaaaccgctaccacccaaggccgagcccgcctgggaa
caaggagagctgctatga
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