KEGG   Pseudomonas yamanorum: AK972_5852
Entry
AK972_5852        CDS       T05821                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pym  Pseudomonas yamanorum
Pathway
pym03030  DNA replication
pym03410  Base excision repair
pym03420  Nucleotide excision repair
pym03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pym00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AK972_5852
   03410 Base excision repair
    AK972_5852
   03420 Nucleotide excision repair
    AK972_5852
   03440 Homologous recombination
    AK972_5852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pym03032]
    AK972_5852
   03400 DNA repair and recombination proteins [BR:pym03400]
    AK972_5852
Enzymes [BR:pym01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AK972_5852
DNA replication proteins [BR:pym03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AK972_5852
DNA repair and recombination proteins [BR:pym03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     AK972_5852
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AK972_5852
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: AMW86652
LinkDB
Position
complement(6522706..6525498)
AA seq 930 aa
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFD
AKGGTFRDELYAEYKANRASMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLVAKLEEHKAS
AFLSYELATIKIDVPLDVGLEDLHLIEPDREKLLELYTLLEFKSWIDEIQRDAKRVELSA
APSAAVVDEAIETVAPVSVEPVYETILTQAQFDVWLKKLNDAKLFAFDTETTGIDAQKAQ
LVGVSFAVQAHEAAYIPLTHSYIGAPEQLDRDTVLLALKPLLEDPEKLKVGQHAKFDMNI
LANCAIGGDPAHGITVRGIAFDTMLESYVLNSVATRHDMDSLAKKYLDYDTVSFQDIAGK
GAKQLTFDQIPLEQAGPYAAEDADVTLRLHQELHKQLSAIPTLASVVSDIEMPLVPVLAR
IERQGALVDAALLGIQSIELGNKMVDLERQAYEIAGEEFNLGSPKQLGAILYEKLGLPVL
KKTGKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRVHTS
YHQAVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLS
KDAGLLNAFRDDLDVHTATAAEVFKVELAEVTSNQRRSAKAINFGLIYGMGAQKLGKDIG
VDTKTAKAYIDVYFARYPGVREYMERTRAQAADQGYVETLFGRRLYLPEINSNKPQERAG
AERTAINAPMQGTAADIIKKAMVKVDNWLTASGLDAKVILQVHDELVLEVREDLVAEVSA
KIREHMSDAAKLDVPLVVDVGVGDNWDEAH
NT seq 2793 nt   +upstreamnt  +downstreamnt
atgagccaagcccccctcgtcctggtggacggttcttcttacctgtaccgcgcctttcac
gcgctgccgccgctcaccacttccaaaggcctgcctaccggcgcggtcaagggcgtgctg
aacatgctcaaaagcctgcgcaaacagtacccgaacagtccgttcgcggtggtgttcgac
gccaagggcgggacatttcgcgatgagctgtacgccgaatacaaggccaaccgcgcgagc
atgcccgatgacatgcgcgtgcagatcgagccgctgcaccagagcgtgatcgccctgggc
ttcccgctgctgtgcgtcgaaggcgtggaagcggacgacgtgatcggcaccctggcccgc
agcagcgcggccgccgaccggccggtggtgatttccaccggtgacaaggacatggcgcag
ttggtggacgggcacattaccttggtcaacaccatgaccggtagcgccatggacgttgag
ggcgtgaaggagaaattcggtgtcgctcccgagcagatcatcgattacctggcgttgatg
ggcgactcgtccgacaacatcccgggcgttccgggcattggtccgaagacggcttccggc
ctgttggtaggcgtgaacggcggtttgaaagagctctacgagcagctcgatatcgtgccg
accttgccgattcgtggtgccaagacgttggtcgccaaactggaagagcataaggcgagt
gcgttcctgtcctacgagttggcgacgatcaagatcgatgtgccgctggatgtgggcctg
gaagacttgcacctgatcgagccggatcgcgagaagctgctggagctgtacacgctgctg
gagttcaagagctggattgacgagattcagcgcgatgccaagcgtgttgagctgagcgcc
gccccatcggccgcagtcgtggacgaagcgattgaaacagtcgctccggtttctgtagag
ccggtgtacgaaaccatcctcacccaggctcagtttgatgtctggctgaagaagctcaac
gacgccaagctattcgcctttgataccgaaaccaccgggatcgacgctcagaaagcgcaa
ttggtgggtgtgtcgtttgccgtgcaggcccatgaagcagcctacattccgctgacccac
tcctacatcggtgcgccggaacagctggatcgggacaccgtgctactggccctgaagccg
ttgctcgaagacccggaaaaactcaaggtcggccagcatgcgaagttcgacatgaacatc
ctggccaattgcgccatcggtggcgacccggcacacggcatcaccgtgcgcggcatcgcc
ttcgacaccatgcttgaatcctacgtgctgaactccgtggcgactcgccacgacatggac
agcctggcgaagaagtacctggactacgacaccgtcagcttccaggacatcgccggcaaa
ggcgccaagcagctgacctttgaccagattccccttgagcaggcgggaccttacgcagcg
gaagacgccgatgtgaccctgcgcttgcatcaggaactgcacaagcagctctctgcgatt
cctaccttggccagcgtcgtgtccgacatcgagatgccgctggtgccggtcttggcgcgc
attgagcgtcagggcgccttggtggatgctgccctgctgggtatccagagcatcgagctg
ggcaacaagatggtggacctggagcgccaggcgtatgaaatcgccggcgaggagttcaac
ctgggctcgcccaagcagttgggcgcgatcctctacgagaagctcgggctgccggtgttg
aagaagaccggcaagggccaggcctcgacggccgaggaagtcttggccaaattggctgaa
gacgactacccgctgccaaaagtgctgatgcagtaccgcagcatgagcaagctgaaaagc
acctataccgatcgcttgccggagcagatcaacccgcgtaccgggcgggttcatacgtcc
tatcaccaggccgtcgcagccaccgggcggctgtcttccagcgatccaaacctgcagaac
attccggtgcgtaccgccgaaggccggcgtattcgccaggcgtttgtcgcgcccaagggc
tacaagctgctggcggcggactattcccagatcgagctgcgcatcatggcgcatttgtcc
aaggacgcagggttgctgaatgcgttccgcgacgacctcgacgtgcacaccgccacggcg
gctgaggtgttcaaggttgagttggctgaggtcacatccaatcagcgtcgcagcgccaag
gcgatcaactttggcctgatctacggcatgggcgcccagaagctcggcaaggacatcggc
gtcgacaccaagaccgccaaggcttacatcgatgtgtacttcgcccgctacccgggggtt
cgcgagtacatggagcgcacccgtgcccaggcggctgaccagggctacgtggaaaccttg
ttcgggcgccgcctgtacctgccggagatcaactccaacaagcctcaggaacgtgcgggc
gccgagcgtacggcgatcaacgcgccgatgcagggtaccgcggccgatatcatcaagaag
gccatggtcaaggtcgacaactggctgacggcctcgggcctggacgctaaggtcatcctt
caggtgcacgatgaattggtgctggaggtgcgtgaagacctggtagctgaagtcagcgcg
aagattcgtgagcacatgagcgatgcggcgaagctggatgtgccactggtggtggacgtc
ggcgtgggcgacaactgggacgaggcgcactaa

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