KEGG   Pyrococcus sp. NA2: PNA2_0205
Entry
PNA2_0205         CDS       T01487                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pyn  Pyrococcus sp. NA2
Pathway
pyn03030  DNA replication
pyn03410  Base excision repair
pyn03420  Nucleotide excision repair
pyn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pyn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PNA2_0205
   03410 Base excision repair
    PNA2_0205
   03420 Nucleotide excision repair
    PNA2_0205
   03430 Mismatch repair
    PNA2_0205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pyn03032]
    PNA2_0205
   03400 DNA repair and recombination proteins [BR:pyn03400]
    PNA2_0205
Enzymes [BR:pyn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PNA2_0205
    6.5.1.6  DNA ligase (ATP or NAD+)
     PNA2_0205
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PNA2_0205
DNA replication proteins [BR:pyn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PNA2_0205
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PNA2_0205
DNA repair and recombination proteins [BR:pyn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PNA2_0205
   NER (nucleotide excision repair)
    Other NER factors
     PNA2_0205
   MMR (mismatch excision repair)
    Other MMR factors
     PNA2_0205
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Tcp10_C DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: AEC51123
LinkDB
Position
180264..181943
AA seq 559 aa
MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKVPEDHLDFIPYLILGDVFPEWDERELGV
GEKLLIRAVSMATGVDPQEIENSVKDTGDLGESIALAVKKRKQRSFFSQPLTIKRVYQTL
VKVAETTGEGSQEKKMKYLANLFMDAEPIEAKYIARTVLGTMRTGVAEGLLRDAIALAFH
VKVELVERAYMLTSDFGFVAKIAKAEGNEGLSKVTIQLGKPIKPMLAQQAANIKEALLEM
GGEAEFEIKYDGARVQVHKDGNKVIVYSRRLENVTRAIPEIVEAIRSAIKAERAIVEGEL
VAIGENGRPLPFQYVLRRFRRKHNIEEMMKKIPLELNLFDVLYVDGTSYIDTEFIKRRET
LERIVEPNGKIKIAENLITRKVEEAEEFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFILGAYDPETGEFVEVGKVGSGFTDDDLLEFT
KMLKPLIIKEEGKRVWVQPKIVIEVTYQEIQKSPKYKSGFALRFPRYVALRDDKSPEDAD
TIERIAQLYELQERMKGKI
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgagatatcttgaacttgctcagctttatcaaaagctggaaaaaacaacaatgaaactc
ataaagacaagacttgtggctgacttcctaaagaaagttcccgaggaccatctcgacttc
ataccatatttaatacttggagatgtctttccagagtgggatgagagagagcttggagtt
ggtgagaagttactgataagggcagtttccatggccacaggagttgatccccaggagata
gagaactccgtaaaagatactggagacttgggggaaagtatagctctagctgttaaaaaa
agaaaacaaagatcattcttctcccagcctttgacaataaaaagggtttatcagacattg
gttaaggtagcagagacaacaggagaaggaagccaggaaaagaagatgaagtacctagcc
aacttattcatggacgctgaaccaatagaggcaaagtacatagcaaggactgtccttgga
acaatgagaactggagttgcagagggattgctgagagatgcgattgccttagccttccat
gtaaaagttgaattagtggaaagggcatacatgctaacaagtgacttcggttttgttgca
aagatagcaaaggctgagggcaacgaagggttatccaaagtcacaattcaattagggaag
cctataaagccaatgcttgcacaacaagcagcaaacataaaggaggccttacttgaaatg
ggcggagaggctgagttcgagatcaaatatgatggagcaagagttcaagttcacaaagat
ggaaataaggtgatagtgtactcgagaagattggagaacgtaacgagggcaatcccggag
atagtggaggcaataagaagtgccattaaagcagaaagggcaatagttgaaggggagcta
gttgcgataggtgaaaacggtagacccctacccttccaatacgtactcaggaggtttaga
agaaagcacaacatagaggagatgatgaagaagataccacttgagctgaatctattcgat
gtgctgtacgttgacggaacaagctacattgatactgaattcataaagagaagggaaacc
ctcgaaaggatagttgaaccgaacgggaagataaagattgctgaaaacttaattacaaga
aaagttgaggaagcagaggaattctacaaaagggcgctggagatgggtcatgagggatta
atggcaaagaggctagatgccgtgtacgagccaggaaatagaggaaagaagtggctaaag
attaagccaacaatggagaatctcgatctagtaatcattggagctgagtggggagaagga
aggagagcccacctactagggtcattcatcctaggtgcatacgatccagaaactggagag
ttcgtggaagtcggtaaggttgggagtggcttcacagatgacgatctactcgagttcaca
aagatgctaaaacctttaataataaaggaggaaggaaagagagtttgggtccagccaaag
atagtcatcgaggttacttaccaggagatacagaagagtccaaaatacaaaagtggattc
gcattaagattcccaaggtacgttgctcttagagatgacaagagtccagaagatgctgat
acaatagagaggatagcccagctgtatgagctccaggagagaatgaaaggaaaaatctaa

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