Pyrococcus sp. NA2: PNA2_0569
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Entry
PNA2_0569 CDS
T01487
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
pyn
Pyrococcus sp. NA2
Pathway
pyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNA2_0569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyn03019
]
PNA2_0569
Messenger RNA biogenesis [BR:
pyn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PNA2_0569
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PNA2_0569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
Auto_anti-p27
A2L_zn_ribbon
Trm112p
HVO_2753_ZBP
Zn_ribbon_IS1595
FtrD-like
DZR_2
YnfU
DZR
Zn_ribbon_CLPX_N
Zn_ribbon_3
HypA
Motif
Other DBs
NCBI-ProteinID:
AEC51485
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All DBs
Position
complement(488152..488748)
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AA seq
198 aa
AA seq
DB search
MEEGNWKKRTVKNGDFVLPGEYLGVMEEYLPGDGVIVEDGNLYSTRAGWVRIDKDKIEIS
LEPASKVPPIPKKGDIVYARVLDVKQQAVLLKLIKIEGQSRGVATSTLAGIHISQVKDGF
VEDLRNEFKIGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVCPK
CGNIETRKLSTLYRKVNI
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
ttggaggagggaaattggaaaaagagaacagtaaaaaatggagattttgtacttcctgga
gagtatctgggcgtgatggaggaatatcttcctggagatggtgttatagttgaagatgga
aatttatactcaacgagggctggatgggttaggatagacaaggataagattgagataagt
ttggaaccagcctcaaaagttcctcccattccaaagaagggagatatagtttacgctagg
gttttagatgtgaagcaacaggccgttctgctcaagctgataaagatagagggacaaagc
agaggggtagctacatcgaccttagcggggattcacatatcccaggtaaaggatggcttc
gtcgaagatttaaggaacgaatttaagatcggggacatagttagggctagggtcatagca
gatgagaaaagtccaatccagttaacgactaaggatcctgatcttggcgtcgtttatgcc
ctctgttcaaagtgtagaacacctctagttagaaaagggaaccaactggtctgtccaaaa
tgcggaaacattgagactagaaagttatcaacactgtacaggaaggtgaacatatga
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