Plasmodium yoelii: PY17X_0102500
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Entry
PY17X_0102500 CDS
T01035
Name
(RefSeq) Homo sapiens KIAA0052 protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pyo
Plasmodium yoelii
Pathway
pyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PY17X_0102500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyo03019
]
PY17X_0102500
03041 Spliceosome [BR:
pyo03041
]
PY17X_0102500
03009 Ribosome biogenesis [BR:
pyo03009
]
PY17X_0102500
03016 Transfer RNA biogenesis [BR:
pyo03016
]
PY17X_0102500
Enzymes [BR:
pyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PY17X_0102500
Messenger RNA biogenesis [BR:
pyo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PY17X_0102500
Spliceosome [BR:
pyo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PY17X_0102500
Complex C
U4/U6.U5 tri-SnRNP related factors
PY17X_0102500
Ribosome biogenesis [BR:
pyo03009
]
Eukaryotic type
Pre-60S particles
Helicases
PY17X_0102500
Transfer RNA biogenesis [BR:
pyo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PY17X_0102500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
Motif
Other DBs
NCBI-GeneID:
3806990
NCBI-ProteinID:
XP_729688
UniProt:
A0A078K256
Q7RNF7
LinkDB
All DBs
Position
1:join(186607..190400,190520..190655)
Genome browser
AA seq
1309 aa
AA seq
DB search
MSENIDDLFNVFEEDETKKNLPNNSKAPDHLNAIVEEQNGQDNIAYPNEGYIMKNEQTIN
NKTTKAEIKENEIEMEINYESPEYNAPIDYKININNIISNHKSNNKIKEQIKEEIYNEAG
SINRSNNLFNNKIRKTNGENSQTKTEIRTNTYKEPVREMLIENSKTINNDDVLVLEEFGS
DVNCIHKCVRPQSYVHNKLSESITPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGK
TVIAEYAIALGLRDKQRVIYTSPIKALSNQKYRDLSEEFKDVGLITGDISINPEASIIVM
TTEILRSMLYRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIP
NGIQFAEWVSSIKNQACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKNFKKDNFIKAV
NALKDRSMLDENNQSGGNNKFNKRMRKNTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVN
ATTLHKVNLTDDSEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIHHGGLLPI
IKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLKKFDGLEKRLITSGEYIQMAG
RAGRRGLDDRGIVIIMLDSPLHWKDAEKLFVGEANRLVSQFHLGYNMILNLLRIEGITPE
FMIERSFIQYQMKKNLFEQIFASKKVEQKSQEILNILTNIYLGQNGEEFTKAYLLNQVKT
NDVETILKNKNVKNEGTHILLENNDPNDPKTIDDYNNSETSNTVLKNYITTFSEISNYYI
TRNKLVELGETYRSLLTSKKNITQYLTMGRLLYAVEDDLKWGWCICIEGRIAEEKYNNNH
KNNSTGNNRNTGNDNNIIGYDTNHTNSSNDTKFNKKNSVENNRNNTNILVVECLVPYVQN
KKRKFPQNNDDDDDNKNSQKRDLEFLPAHDRLKAQWKVMTFYIKCIYQISAVVLNIEKPF
DKSSEEEIEKVKNKYNTMVSCLKGEQNIPVIGSNQMNIKDDEFFKIVKNIYYYENILNKN
KLLNNKNLNKYYQLYSKYVALQCEKNILDCNIEQCKFIVLKKELNNMLILLESLNYIEIT
YKTHEKNQTNNDQTNRSDGENDQKQIDTINEKLLTQSDTHNDITNKNNNDEKNYVVTMKG
QIASAILSVDELVISELFFSNFFSKYTYDYICAFLSCFVYDESTNKEITINDPILIEGYQ
QITKTATIIANKMNQCGMNINVKDYLEKFKSAIMPIVLLWARGHSFMEILADSQIYEGSI
IRTLRRLDELLRQMICAFRGINNDNMCEILTTATKKLRRGIPFSPSLYL
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattgatgacttatttaatgtttttgaggaggatgagacaaaaaaaaat
ctaccaaataatagcaaagcccccgatcatttaaatgctattgtagaagaacaaaatggc
caagacaatatagcctatccaaacgaagggtatataatgaaaaatgaacagactataaat
aacaaaacaacaaaggccgaaattaaggaaaatgaaattgaaatggaaataaattacgaa
agccccgaatataatgccccaatagactacaagataaacattaacaatataataagtaat
cataaaagtaataataaaataaaagagcaaattaaagaagaaatatataatgaggcagga
agtataaatagaagtaataatctttttaataataaaataagaaaaacgaatggagaaaat
agtcaaacaaaaactgaaataagaacgaacacatataaagaacctgttcgggaaatgcta
attgaaaatagcaagacaataaataatgatgatgttttagttttagaagaatttggtagc
gatgtgaattgcatacataaatgtgttaggcctcaaagttatgtacataataaattaagt
gaatctataacacctgctagaacatataaatttgagttagatacttttcaaaaaaaatca
atagaatgtttagaaagaaatgaaagtgttctagtatctgctcacacatctgctgggaaa
accgttatagcagaatatgcaatagcattaggattgagagataaacaaagagtaatttat
acaagtcctataaaagcattaagcaatcaaaaatatagagacttgagtgaagaatttaaa
gatgtaggattaattacaggtgatatatcaataaatccagaagcatctataatagttatg
acaacagaaattctgagatctatgctatatcgaggatcttcattaacaaaagaagtgaaa
tgggtcatatttgatgaaattcattatatgagagatagagatagaggtgttatatgggaa
gagactattatattgctcccattaatggttcgattcattttcttaagtgctaccatacca
aatggtatacagttcgctgaatgggttagtagtattaaaaaccaagcatgtcatattgtt
tatacagattataggcctacacctcttcaacattatatttatcctacatctagtgaaagt
gtatttttaatatgtgatgaaaataaaaattttaaaaaagataattttataaaggctgtt
aacgcactgaaagatagaagcatgttagatgaaaataaccaaagcggtggaaataataaa
tttaataaacgaatgagaaaaaatacatatgatattgaaaaaatcgttcaaatgtgtcac
tctcgtaattacactcctttaattatttttgcattttcaaagaaagaatgcgaagttaat
gctacaacattgcataaggttaatttaactgatgattcagaaaaagaagtcataaaagaa
ttatatgaaaatgctattcaaatattagcagatgatgatagagcattgccacaggtccaa
tttattttaccactattattaagagggattggtattcatcatggaggattattaccaata
attaaagaaattatagaaattatgtttcaagaatcattattaaaagttttatttagtact
gaaacattttctatgggtataaatatgccagccaaaacagtcgtatttacatcactaaaa
aaatttgatgggttagaaaaaagattaatcacatcaggtgaatatattcaaatggcagga
agagctggaagaagaggattagatgatagagggattgttattattatgctagatagtcca
ttacattggaaagatgctgaaaaactgtttgtaggcgaagctaatcgattagtgagccaa
tttcatttaggttataatatgatattaaatttattaagaatcgaaggtattacaccagaa
tttatgattgaaagatcttttattcaatatcaaatgaaaaaaaatcttttcgaacaaatt
tttgcatcaaaaaaagttgaacaaaaaagtcaagaaattttaaatatattgacaaatatt
tatttaggtcaaaatggggaagaatttactaaagcatatttattaaatcaagttaaaaca
aacgatgtggaaacaattttaaaaaataaaaatgtaaaaaatgaaggaacacatatttta
cttgaaaataacgatccaaatgaccccaaaacaatagatgattataataatagtgaaact
tcaaacacggtactcaaaaattatattactacattttctgaaatatctaattactacata
acacgaaataaacttgttgaactgggggaaacttatagatcattattaacatctaaaaaa
aatataactcaatatttgaccatgggtagattactatatgctgttgaggacgacttgaag
tggggatggtgtatttgtattgaagggagaattgctgaagaaaaatataacaataatcat
aaaaataatagtacaggaaataatcgtaatacaggaaatgataataatatcattggctat
gataccaaccacaccaatagttccaacgatacaaaatttaataaaaaaaactctgtagaa
aataatagaaataatacaaatatattagtcgtagaatgcttagttccctatgttcaaaac
aaaaaacgaaagtttcctcaaaataatgatgatgatgatgataataaaaattcccaaaaa
agagatttagaatttttaccagctcatgatagattaaaagctcaatggaaagtcatgaca
ttttatataaaatgcatatatcaaatatcagcagttgttttaaatatagaaaaaccattt
gataaatcttctgaagaagaaattgaaaaagttaaaaataaatataatactatggtgagc
tgcttaaagggagaacaaaatataccagttattggttcaaatcaaatgaatattaaagat
gatgagttttttaaaattgttaaaaatatttattattatgaaaatatattaaataaaaat
aaattattaaataataaaaatttaaataaatattatcaattatatagtaaatatgttgct
ttgcaatgtgaaaaaaacatacttgattgcaatattgaacaatgtaaatttattgtatta
aaaaaggaattaaataatatgctcatattactagaaagcttaaactatattgaaattaca
tataaaacccatgaaaaaaatcaaacaaataatgatcaaacaaatcgttccgatggcgaa
aatgaccaaaaacaaattgatactattaacgaaaaattgcttacacaaagtgacactcat
aatgacatcactaataaaaataataatgatgaaaaaaactatgttgttacaatgaaagga
caaatagctagtgcaattttaagtgtggatgaattagttatatctgaattatttttttca
aattttttcagtaaatatacttatgattatatatgcgcattcttatcatgttttgtatat
gatgaatcaacaaataaagaaattaccattaacgaccctatactaatcgaaggatatcag
caaataactaaaacagcaacaataatagctaataaaatgaatcaatgtggaatgaatata
aatgtaaaagattatttggaaaaatttaaatcagctattatgcctattgttttgttatgg
gctcgtggtcattccttcatggaaattctcgcggattcacaaatatatgaaggatcaata
ataagaacattaagacgtttggatgaactactaagacaaatgatttgcgcatttagagga
attaataatgataatatgtgtgaaatcttaaccaccgctacaaaaaagttgcgccgggga
attccattttcaccttccctctatttataa
DBGET
integrated database retrieval system
