Plasmodium yoelii: PY17X_0312900
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Entry
PY17X_0312900 CDS
T01035
Name
(RefSeq) DNA-directed RNA polymerase subunit beta
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pyo
Plasmodium yoelii
Pathway
pyo03020
RNA polymerase
pyo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pyo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PY17X_0312900
09124 Replication and repair
03420 Nucleotide excision repair
PY17X_0312900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pyo03021
]
PY17X_0312900
03400 DNA repair and recombination proteins [BR:
pyo03400
]
PY17X_0312900
Enzymes [BR:
pyo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PY17X_0312900
Transcription machinery [BR:
pyo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PY17X_0312900
DNA repair and recombination proteins [BR:
pyo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PY17X_0312900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
3801347
NCBI-ProteinID:
XP_728803
UniProt:
A0A078K6B9
Q7RQI2
LinkDB
All DBs
Position
3:join(491898..491949,492108..495994)
Genome browser
AA seq
1312 aa
AA seq
DB search
MHVKIEKPYAPPEFMKSDQNIEDVSDKDDEDQITEEDSWIVIGSFFGSHGLVNQQIESYN
DFIEYRMQEIIDEHPNIEIKPQPQYRPDKDENNNIIYSLKFGQLSLDRPFFDEKNLINKN
LWPQEARLRNLTYSSAIYIDIEQSTYIVDENTKKQILKEKFVYERINLGRIPLMLKSMFC
WTKGLPDNDISDMGECSLDQGGYFIVNGGEKVLVAQERMANNFIYVFKKKHSSKFGWIAE
IRSQMEKSQATSAFSVKMKTKSGSRGSGGSGKSSGGLLVATLPYIRTEISVGILFRALGC
TSDRDILQRIVYDLNDKMMINILKETLEECIDYPTQDICLDYIGKRGPTVGASRDKRILY
AKELLRKEVLPHMGTGPGVESRKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGP
LMASSFATYFRKMAKDVKRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDK
DGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEG
QSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLESLDEVPPQLMKEKVKLFLNGKWVGCF
NQIDNLIETLYELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNVGGKNKLK
LTKEHIKNATKYPDKYNWDYFIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYYNNYTHC
EIHPSLILGVCASIIPFSDHNQSPRNTYQSAMSKQAMGIYVTNFNIRLDTLAHLLYYPQK
PLVCTKATEYLHFKDLPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTS
EEKQQGSLIIESFEKPSIRVVKGLKRGDYTKLEDDGLIAPGIRVLGDDIIIGKVSPSIDD
EEDIIIQRKIPNTSLSTSNNKNIYDTTVGSDNISSNSSVMGNPSYGSTMLDAGSEPNVND
RYTSGSSSVGSDTSSRINSVSGQSHTTLVTGAESDRYGSTTGATIREDVEVPTLTIRTTN
AMKQYKKDCSLSIRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKG
TIGITYRMEDMPFTSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFS
KITVQEISERLHRLGYEKYGNDILYNGHNGKMLTSKIFIGPTFYQRLKHMVEDKIHARSR
GPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDICGL
CCVADINKNAYECTICNSKTNISQIYIPYACKLLFQELMTMAIYPKLVLEDM
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttaaaatcgaaaaaccgtatgctccccccgaatttatgaagtcagatcaaaac
attgaagatgtgagtgataaagatgatgaagatcaaattacagaagaagatagttggatt
gtgataggatctttttttggaagtcatggtttggtaaaccaacaaattgaaagttataat
gattttatagaatatagaatgcaagaaattatagatgaacatccaaatatcgaaataaaa
cctcaaccacaatatagaccagataaagatgaaaataataatataatttattctttaaaa
tttgggcaattatctttagatagacctttttttgatgaaaaaaatctaattaataaaaat
ttatggcctcaagaagccagattacgaaacttaacatattcatctgctatatatattgat
attgaacagagtacatatattgttgatgaaaatacaaaaaaacaaatcttaaaagaaaaa
tttgtatatgaacgtataaatttaggtagaataccacttatgcttaaatcgatgttttgt
tggacaaaaggtttacctgacaatgatatttcagatatgggagaatgtagtttagatcaa
ggtggatattttattgttaatggtggtgaaaaggttttagttgctcaggaaagaatggca
aataattttatatatgtatttaaaaaaaaacattcttcaaaatttggttggattgcagaa
attcgatctcaaatggaaaaatcacaagctacatctgctttttctgtaaaaatgaaaaca
aaatcgggttctagaggtagtggtggatctggaaaatcaagtggtggattacttgttgct
acattaccatatataagaactgaaatttcagttggaatattatttagggcattaggatgt
acatctgatagagatattttacaacgtattgtatatgatttaaatgataaaatgatgata
aatatattaaaggaaacgttagaagaatgtattgattatccgactcaagatatctgttta
gattatattggaaaaagaggaccaacagttggtgcatcacgtgataaaagaattttatat
gcaaaagaattattacgaaaagaagtattaccacatatgggtacaggaccaggagttgaa
agtagaaaatcatattttattggatatatgataaatagattattattagcagaattagga
agaataaaagaagatgatagagatcattttggaaaaaaaagattagatattgctggacca
cttatggcaagtagttttgctacttattttagaaaaatggcaaaagatgtaaaaagagta
ttacaaagacagatagataataataaaccatttgatgtagctggagctataagaagttgt
tctcaaataacacaaggaatgcaatatcaattagcaacaggaaattggggtaaagataaa
gatggtaaagttataagaacaggtgtagcacaagtattaaatagattaacatattcttca
tgtttatcacatttaagaagattaaatacaccattaggtcgagaaggaaaaatggcaaaa
ccgaggcaattacataatacacattggggtatgatatgtccatttgaaactccggaaggt
caatcagttggtttagtaaaaaatttatcattaatgtgtgatataagtgttggtacatct
actaataatatatatgaatttttaacagaatggggtctagaatcactagatgaagtacca
ccacaattaatgaaagaaaaagtaaaattatttttgaatggaaaatgggttggctgtttt
aatcaaatagataacttaatagaaactttatatgaattaagaagaagatgtgatatatct
ccagaagcttcaattgttagagatgtaaatagtaaagaaataaaaatttttacagattca
ggtagagccatgagaccattatatgtagtaaaaaatgtaggaggtaaaaataagttaaaa
ttaacaaaagaacatataaaaaatgctacaaaatatccagataaatataattgggattat
tttatacaagaaggtattattgaatatatagattgtgaagaagaagaaacaactatgata
agtatgtttatagatgatttaaaaactggaacaggttattataataattacacacattgt
gaaatccatccatctttaattttaggagtttgtgcatctattatcccatttagtgatcat
aatcagagcccacgtaatacatatcaaagtgcaatgagtaaacaagcaatgggtatatat
gtaacaaactttaacataaggttagatacattagctcatttattatactatcctcaaaaa
ccattagtatgtacaaaagctacagaatatttacattttaaagatttaccagctggaatc
aatgcaattgtggcaattatgtgttatacaggatataatcaagaagatagtttaattatg
aatcaatcttctattgatcgaggattatttagaagtgtattttatcgtacatatactagt
gaagaaaaacaacaaggtagtttgataattgaatcttttgaaaaaccatctataagagta
gttaaaggattgaaaagaggtgattatacaaaattagaagatgatggtttaatagcacct
ggaattcgggttctaggtgatgatattattattggtaaagtatctccaagtatagatgat
gaagaggatataataattcaaagaaaaattcctaatacatctttgagtacatctaataat
aaaaatatttatgatactacagttggtagtgataatattagtagtaattctagtgtgatg
ggaaatccatcatatggttctactatgttagatgcaggttctgaacccaatgtaaatgat
agatacacatctggtagtagtagtgttggaagtgatacctcatctagaatcaattctgtg
tcaggtcaatcacataccacattagtaacaggtgcagaaagtgatagatatggtagtact
actggtgctacaattagagaagatgttgaagtaccaacattaactatccgcacaactaat
gcaatgaaacaatataaaaaagattgttctttaagtataagatcaaatgaaaatggtgtt
atagatacagttatgttatcatcaaatagtagaggtaataaatttgctaaagtaaaagtt
cgatctgttcgaattcctcaaattggagataaatttgcaagtagacatggtcaaaaaggt
acaattggtataacatatagaatggaagatatgccatttacatctgatggtacatttcct
gatattattatgaatccacatgctgttccatctcgtatgactattggacacttagtagaa
tgcttagctggtaaagtagctgctattgaaggaggagaaggagatgcaacgccattttct
aaaatcacagttcaagaaatttctgaacgtttacatagattaggttatgaaaaatatggt
aatgatatattatataatggtcataatggtaaaatgttaacatctaaaatatttatagga
ccaacattttatcaaagattaaaacatatggtagaagataaaatacatgctagaagtaga
ggacctttaactatgattacaaggcaaccaacagaaggaagatcaagagatggtggtctt
agatttggtgaaatggaacgagattgtatgatatctcatggatctgctaaaatgttaaaa
gaacgtttatttgaagaaagtgatgcttatcgtgttcatgtgtgtgatatttgtggatta
tgttgtgtagcagatataaataagaatgcttatgaatgtactatatgtaatagtaagacg
aatatttcacaaatttatattccatatgcatgtaaattacttttccaagaattaatgaca
atggcaatatatccaaaacttgttcttgaagatatgtaa
DBGET
integrated database retrieval system
