Plasmodium yoelii: PY17X_0620200
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Entry
PY17X_0620200 CDS
T01035
Name
(RefSeq) 3'-5' exoribonuclease Csl4
KO
K07573
exosome complex component CSL4
Organism
pyo
Plasmodium yoelii
Pathway
pyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PY17X_0620200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyo03019
]
PY17X_0620200
Messenger RNA biogenesis [BR:
pyo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PY17X_0620200
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PY17X_0620200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
3830483
NCBI-ProteinID:
XP_731258
UniProt:
A0A078KH97
Q7RSM3
LinkDB
All DBs
Position
6:join(893856..894324,894487..894602)
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AA seq
194 aa
AA seq
DB search
MDNIVLPGEVVGNLNNYISGNNTYILNNEIRSTILGKKNISINNENKEIINIDVIKDYTP
LPQVGDLVICKVYRVTFNMIYCNILLTNNKPLKNSLKGYINKSDIHIYEGDLGDNFDCFK
QGDIIKAKVLSIGQHSSYKLSTVGSDLGVIIALSEKGDILQPAAWNLMVNLSDMSFEQRK
VSNEFSFPCNAYTS
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggataatattgtgttacctggagaagtagttggaaacctaaataattatataagtgga
aataatacatatatattgaataatgaaataagatcaaccatattaggtaaaaagaatatt
agtattaataatgagaataaagaaattattaacattgacgttataaaagattatacacct
ttaccccaagtaggagatcttgttatatgcaaagtatatagagtaacatttaatatgata
tattgtaacattctattaacaaataataaaccattaaaaaatagtcttaaaggatatata
aataaaagtgatatacatatatatgaaggagatctaggagataattttgattgttttaaa
caaggagacataattaaagcaaaggttttatcaataggtcaacattcatcatacaaactt
tctactgttggatcggatttaggcgttattatagcattaagcgaaaagggcgatatatta
caaccagcggcatggaatttgatggtcaatttaagtgacatgagtttcgaacaaagaaag
gtctccaacgagttttctttcccatgtaatgcttacacgtcttaa
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