Plasmodium yoelii: PY17X_1238500
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Entry
PY17X_1238500 CDS
T01035
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2, putative
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
pyo
Plasmodium yoelii
Pathway
pyo03018
RNA degradation
pyo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pyo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PY17X_1238500
09123 Folding, sorting and degradation
03018 RNA degradation
PY17X_1238500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyo03019
]
PY17X_1238500
03041 Spliceosome [BR:
pyo03041
]
PY17X_1238500
Messenger RNA biogenesis [BR:
pyo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PY17X_1238500
mRNA degradation factors
5'-3' decay
Lsm complex
PY17X_1238500
Spliceosome [BR:
pyo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PY17X_1238500
Complex C
U2 snRNP components
PY17X_1238500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
SM-ATX
Motif
Other DBs
NCBI-GeneID:
3790125
NCBI-ProteinID:
XP_022812706
UniProt:
A0A078KAY0
LinkDB
All DBs
Position
12:join(1558496..1558498,1558731..1558895,1559161..1559307)
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AA seq
104 aa
AA seq
DB search
MLFFTFFQQLAEKNQHITIELKNDLQISGVLHSVDQYLNIKLTNISVNNPEKYPHLLSIK
SCFVRGSVVRYVFLPSNEVNVEKLRHMCRQEAKMISDKEKNNPK
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atgcttttttttacgttttttcaacaactagctgaaaaaaatcaacatataaccatcgaa
ttaaaaaatgacttacaaatatcaggggtattacattcagtagatcaatatctaaacatt
aaattaacaaatatatcagttaataatccggagaaatatccacatttattatccattaaa
tcatgttttgtaagagggtcagtagtgaggtatgtgtttttaccatcaaatgaagttaat
gttgaaaaattacgtcatatgtgtagacaagaagcgaaaatgatttcagacaaagaaaaa
aataaccccaagtag
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