Pyrobaculum ferrireducens: P186_0217
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Entry
P186_0217 CDS
T01670
Name
(GenBank) RNA binding S1 domain protein
KO
K07573
exosome complex component CSL4
Organism
pyr
Pyrobaculum ferrireducens
Pathway
pyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P186_0217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyr03019
]
P186_0217
Messenger RNA biogenesis [BR:
pyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
P186_0217
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
P186_0217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_Ribbon_1
Zn_ribbon_NUD
Zn_ribbon_3
Auto_anti-p27
DZR
Zn_ribbon_DUF2089
Zn_ribbon_6
HVO_2753_ZBP
Zn_Ribbon_TF
Cas12f1-like_TNB
DNA_ligase_ZBD
DUF7577
FtrD-like
Zn_ribbon_15
DUF7130
Prok-RING_1
Zn_ribbon_NOB1
DUF7309
Motif
Other DBs
NCBI-ProteinID:
AET31678
UniProt:
G7VF62
LinkDB
All DBs
Position
complement(193179..193715)
Genome browser
AA seq
178 aa
AA seq
DB search
MRKIIVTPGELVAYAEEFETKGAVYAVDYRYIAAALGVAAYDEKTHTAVVKPVRPPAIPQ
TGSVVYCQVTGEGRRAYQLRCFAVEEGRGPSELKYIVSGVLPHFFSDGEVGIGDYIRGRV
VSTRGPPIVVSIRGPTYGVVLSRCPRCGSVLRRRGSALYCPNCGVEVKRKMAIGHYST
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagataatagtgacgccaggcgagctggtggcatacgccgaggagtttgagaca
aagggcgcggtgtacgccgtcgactaccggtacatagccgcggcgctgggggtcgcggcg
tacgacgagaagacccacacggccgttgtaaagccggtgaggccgcccgcgattccgcag
acgggctccgtagtctactgccaggtcaccggcgaggggaggagggcctaccagttgaga
tgcttcgcagttgaggagggcagggggccctctgagctgaaatatatagtatccggcgtc
ttgccgcacttcttctcagacggcgaggtgggcataggagactacataagagggagagtt
gtgtcaacacgcgggcctcccatcgtcgtctctataagaggccccacctacggcgtggtg
ctgtcccgctgccccaggtgcggatctgtactgaggaggaggggctccgcgctgtactgc
cccaactgcggtgtggaggttaagagaaagatggcaatagggcactattccacgtaa
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