Pyrobaculum ferrireducens: P186_0441
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Entry
P186_0441 CDS
T01670
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
pyr
Pyrobaculum ferrireducens
Pathway
pyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P186_0441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyr03019
]
P186_0441
Messenger RNA biogenesis [BR:
pyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
P186_0441
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
P186_0441
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AET31895
UniProt:
G7VGR2
LinkDB
All DBs
Position
complement(382940..383761)
Genome browser
AA seq
273 aa
AA seq
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MASISPYGKRFISYLRREQIRKLLAAKYRIDGRGPDQMRDVEIKTGVVKTADGSAEVRLG
KTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDESAIELARVVDRGIR
HCGYVDFKKLVVEGGKAYILWIDLYVINDDGNLVDAANLASVAALKNTQLPTAVKDEAGA
VKLDRNNKLPLPVDVAKAPVAASVGKIGNVLFLDPTFEEELSLDGRITFTFSEDKIVAAQ
KTLGYFTQAELETALSLALKGREKFLETLKSVI
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgataagcccctacgggaagcggtttatctcatacctcagacgggagcagatc
agaaagctcctcgccgccaagtacaggatagacgggagggggcccgatcagatgagagat
gtggagataaaaaccggcgttgtgaagaccgccgacggctccgccgaggttaggctaggc
aagacgcatgtagtcgccggcgtcaaggtggggctgggccagcccttccccgacgccccc
gatgagggcgtgttggtggtaaacgcagaggtcctgccccacgcgtcgccctacacagag
gtgggcccccccgacgagtcggctatagaactcgccagggttgttgacagaggcataaga
cactgcggatacgtagacttcaaaaaactggtcgtggagggggggaaggcgtatatactc
tggatcgatctatacgtaataaatgacgacgggaatctagtagacgcggctaacctagcc
tccgtagccgccctcaaaaacacccaactccccacagctgtgaaagacgaagccggggct
gtgaagctagatcgcaataacaaattaccactgccggtagatgtcgccaaggcccccgtc
gcggcctcggtggggaagataggaaacgtcctattcctagaccccaccttcgaggaggag
ctcagcctagacggcagaatcacatttacattctcagaagacaaaatagtcgccgcccag
aagacgctcggctacttcacacaggcagagctagaaacagccctcagcctagcgctaaag
ggaagagaaaaattcctcgaaacactcaagagcgttatttaa
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