Pyrobaculum ferrireducens: P186_0443
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Entry
P186_0443 CDS
T01670
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
pyr
Pyrobaculum ferrireducens
Pathway
pyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P186_0443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyr03019
]
P186_0443
Messenger RNA biogenesis [BR:
pyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
P186_0443
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
P186_0443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N_2
RRP4_S1
KH_1
S1
RRP40_S1
ECR1_N
KH_KhpA-B
TcpF
Motif
Other DBs
NCBI-ProteinID:
AET31897
UniProt:
G7VGR4
LinkDB
All DBs
Position
complement(384500..385207)
Genome browser
AA seq
235 aa
AA seq
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MYFVTPRQLIFPGDVIATTDSKVEGPVYVDNGRYRSLVVGLVEFREDGVVVVPLEGTYKP
KKGDVVVGYVTDVLATGWEIDVRSFMPAYLPVSEALHRHVDLETTPLTTFLNIGDVVIAK
VKDVDLTDEYPIILTLKEERVGKVESGTVVEITPVKVPRLIGKRGSMLNTLMEVGCDIIV
GQNGRVWIRCRDTRDEVFLATLIKKIEAESHVMGLTDRIRAEIEKYKTQRQQGAV
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgtacttcgtaaccccacgccagctgatatttccaggtgacgtaatagccacgacagac
agcaaagtcgaggggccggtgtatgtggacaacggtaggtatagaagtctagtggttggc
ctcgtggagtttcgggaggacggcgtggttgtggtcccgctcgaggggacctacaagccg
aagaagggagacgtcgtggtgggctacgttacagacgtcctggccaccggctgggagatc
gacgtgaggtccttcatgcccgcctacctccccgtaagcgaggcgttgcatagacacgtg
gacctcgagaccacgccgcttacaaccttcctcaacataggagacgtggtaattgccaag
gtcaaggacgtcgatttaacagatgaatatcccataatcctcacgctgaaggaggagcgc
gttggcaaggtggagagcgggacggtcgtggagataacccctgtaaaagtcccgcggcta
atcggaaagaggggtagcatgctcaacacgttgatggaggtggggtgcgacataatagtc
gggcagaacggcagggtgtggataaggtgtagggatacaagagacgaggtgtttctggca
acgcttatcaagaagattgaggcggagagccacgtcatgggcctcaccgacagaataagg
gcggagatagaaaagtataaaacgcagaggcaacaaggcgccgtatga
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