Pyrobaculum ferrireducens: P186_2427
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Entry
P186_2427 CDS
T01670
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pyr
Pyrobaculum ferrireducens
Brite
KEGG Orthology (KO) [BR:
pyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pyr03016
]
P186_2427
Enzymes [BR:
pyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
P186_2427
Transfer RNA biogenesis [BR:
pyr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
P186_2427
Prokaryotic type
tRNA splicing ligases
P186_2427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AET33813
UniProt:
G7VCK8
LinkDB
All DBs
Position
complement(2022147..2023601)
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AA seq
484 aa
AA seq
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MRNIPINKVSDYVWEIPPGVKPCQKVPVRIYADSVLLEKMKSDMTLEQGINVGCLPGIYR
WSIVLPDAHQGYGFPIGGVAAIDAEEGVISPGGIGYDINCGVRVLRTNLTEEEVRPKLKE
LVDTIFRLVPPGVGGTGHLRLSPTEFERVLAEGVEWAVQKGYGWAEDMDFIEERGSWKLA
DPSKVSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKVAKVFGIEREGQVVVMIHTGS
RGFGHQVATDYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRH
IIMHWVREAFKKVFGSIEKVGLELVYDVAHNIAKLEDHVIDERGTVRRVWVHRKGATRAF
PPGRSEIPARYRDVGQPVLIPGSMGTASWILVGTHDSMKFTFGTAPHGAGRVLSREAAIR
MYPPHKVQEEMSKRGIIVRSAETEVISEEAPWAYKDVDRVVEAAHQVGFAKKVVRQRPIG
VVKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacatccctattaacaaggttagtgactatgtgtgggagattccgcctggggtg
aagccttgccagaaggtgcctgtgcggatttatgcagatagtgtgttgctggagaagatg
aagagcgacatgacgcttgagcagggtattaacgtcggttgcctcccggggatctatagg
tggtctattgtcctgccggacgcccatcagggctacggcttccccatcggcggcgtggct
gcgatagacgccgaggagggggtcatctcgcccggcggcattgggtacgatattaactgc
ggcgtgagggtgctgaggacaaacctcacggaggaggaggttaggccgaagctgaaggag
cttgtcgacacgatatttagactggtgcctccaggcgtcggcggcacgggccaccttagg
ctctccccgacggagtttgagagagtcctcgccgagggcgttgagtgggctgtgcagaag
ggctacggctgggctgaggatatggatttcatagaggagaggggttcgtggaagctcgcc
gacccctccaaggtcagcgagaaggccaaggcgaggggtagagaccagctggggacgctg
ggctccggcaaccacttcctggagatacaggtggtggacaagatatacgacgagaaggtg
gctaaggtattcggcattgagagggagggccaggtggtggttatgatacacacgggtagc
cgcggcttcgggcaccaggtagctaccgactacctgctcataatggagaggaagatgagg
cagtggggtctgaatctcccggacagggagctagcggcggctcctctgaaggacaaggtg
gcggaggactacatcaaggccatggcctccgccgccaacttcgcctggaccaaccgccac
atcataatgcactgggttagggaggcgtttaagaaggtgttcggctctattgagaaggta
ggcctcgagctggtttacgacgtggctcacaacatcgccaagctagaggaccacgttata
gacgagagaggcaccgtgaggagggtgtgggtccaccgcaaaggcgccacccgcgccttc
ccgccggggaggtccgagatcccggccaggtacagagacgtaggccagccggtgctgata
cccggctctatggggaccgcctcgtggatactcgtgggcacccacgactctatgaagttc
accttcggcacggccccgcacggcgcggggagggtgttgagccgcgaggcggccatcagg
atgtacccgccgcacaaggtgcaagaggagatgtctaagagaggtattatcgtacggagc
gccgagacggaggtgataagcgaagaggctccctgggcttacaaagacgtagaccgcgtc
gtcgaggccgcgcaccaagtaggcttcgcaaagaaggtggtgagacagagacctataggc
gtcgtcaaaggctaa
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