| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
pyt Polynucleobacter yangtzensis
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pyt00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PKF023_00440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:pyt03021]
PKF023_00440 (rpoC)
03400 DNA repair and recombination proteins [BR:pyt03400]
PKF023_00440 (rpoC)
Enzymes [BR:pyt01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PKF023_00440 (rpoC)
Transcription machinery [BR:pyt03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PKF023_00440 (rpoC)
DNA repair and recombination proteins [BR:pyt03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PKF023_00440 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
48710..52972
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| AA seq |
1420 aa
MKALLDLFKQTQGDEQFDVIKIGLASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKFRGVICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDPGMTPEGAMKRGQIMSEDEYIAKTEEYGDGAF
TAIMGAEGIRDLLRSIDIDREVETIRADLKATGSDAKIKKYAKRLKVLEAFQTSGIKPDW
MIMEVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEK
RMLQEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKSGRFRQNLLGKRVDYSGRSVIV
VGPTLKLHQCGLPKLMALELFKPFIFNKLETLGIATTIKAAKKEVESQTPIVWDILEEVI
REHPIMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QMEARTLMLASNNVLFPANGEPSIVPSQDVVLGLYYATRDKINGKGEGMVFANITEVVRA
YEAGQVELASRVAVRITEYEIVDKKAEGDARFAEKTKIYQTSVGRAILSEILPKGMSFEE
INKPLKKKEISRLINTSFRKCGLRETVIFADRLLQSGFRLATNAGISVAIDDMLIPTSKE
RIITEASAKVKEYDKQFMSGLVTNQERYNNVVDIWGAAGDQVGKAMMDELSHVDVLDRNG
KTVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLCDVTQDLVVIEEDCGATSGVTMKALVEGGEI
IEALRDRILGRVCIGDIVHPDTQEVIVPNDTLLDEDHVDQIVALGIDEVKVRTVLSCLTR
FGLCAKCYGRDLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRALVASNIE
AKSNGALKFSGTMRVVKNAKGEQIVISRSGEALIVDENGRERERHKVPYGATLLLKEDAA
VKAGASLATWDPLTRPIISEYAGIARFDNVEEGVTVAKQVDEVTGLSTLVVIDGKRRSAA
SKGVRPMINLVDEKGNEVMIAGTDHPVNIGLQVGALITVKDGQKVEVGEVLARIPIESQK
TRDITGGLPRVAELFEARSPKDAAVLAKVTGTVSFGKETKGKQRLVITDMDGEANEFLIP
KEKQVLVHDGQVVNKGEMIVEGPADPHDILTLKGIEELAIYIVDEVQDVYRLQGVKINDK
HIEVIVRQMLRRVQVTDPGDTSFITGEQVERSKLYDANDAVIAQGKHPAQFDNVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKTDTLRGLKENVIIGRLIPAGTGLSYRRARKV
REQFERDRAQMIAAEEEAMANMPVEIEAEVVAPTGEADPS |
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| NT seq |
4263 nt +upstreamnt +downstreamnt
atgaaagcattgctcgatttatttaagcaaacgcagggtgatgagcagtttgatgtcatc
aagattggcctcgcatctcctgagaaaattcgctcatggtcttttggtgaagtacgcaag
ccagaaaccatcaactaccggacatttaagcccgagcgtgatggtttgttttgcgccaag
atttttggaccaacaaaagactacgagtgcttatgcggtaagtacaagcgtttaaagttc
cgtggcgttatctgtgagaagtgcggtgttgaagttactctcgccaaggtacgtcgtgag
cgcatgggccacattgagttggcagcccctgtagcgcacatctggttcttgaagtccctg
ccatcccgtttgggcatggttctcgatatgacattgcgtgatatcgagcgcgtcctttac
tttgaagcatatgtagtggttgatcctggcatgactcctgaaggcgcaatgaagcgcggt
cagatcatgtctgaagacgagtacattgctaagactgaagagtatggtgacggtgcattt
accgccatcatgggcgcggaaggtattcgtgatctcttgcgttcgattgatatcgatcgc
gaagtcgagactattcgtgctgacttgaaagctactggtagcgatgccaagattaagaaa
tacgcaaagcgtttaaaagtgctcgaggcgttccagacttcaggtattaagcctgactgg
atgatcatggaagtattgccagtattgccacctgaattgcgcccattggtgccattggat
ggcggtcgctttgctacctccgatttgaacgatctctatcgtcgtgtaatcaaccgtaac
aaccgtttaaagcgtttgttagagttgcgcgcaccagagatcatcgttcgcaacgaaaaa
cgtatgttgcaagaagcggttgactcattgctcgacaacggtcgtcgcggtaaggctatg
actggcgctaacaagcgtcctctcaagtccttggctgagatgattaaaggtaagagcggt
cgtttccgtcaaaacttgttgggtaaacgtgttgactactctggtcgttcagtcatcgtg
gttggccctacattgaaattgcatcagtgcggcttaccaaaattgatggctttagaattg
ttcaagccattcattttcaacaagcttgagactttgggaattgcaaccactattaaggct
gcgaaaaaagaagttgaaagccagactccaatcgtttgggacattctcgaagaagtgatt
cgtgaacatccaatcatgttgaaccgtgcgcctacattgcaccgtctcggtatccaggct
ttcgagccaatgctgattgaaggtaaagcaatccaattgcacccattagtctgcgcggca
tttaacgccgactttgacggtgaccaaatggcggttcacgttcctttgtcgctcgaagcg
caaatggaagcacgtacattgatgttggcttcgaacaacgtattgttcccagctaacggc
gagccatcaatcgttccttcacaggacgtggtgttgggtctgtactacgctacacgtgac
aagatcaacggtaagggcgaaggcatggttttcgctaacattactgaagtagtgcgtgca
tacgaagcaggtcaagttgaattggcttctcgtgttgctgtgcgtattactgagtatgag
atcgtggacaagaaggcagaaggcgatgcgcgttttgctgagaagaccaagatctatcaa
acatcagttggccgtgcaatcttgtctgagattttgcctaaaggcatgtctttcgaggaa
atcaacaagcctttgaagaaaaaagaaatctcacgcttgatcaacacttcattccgtaag
tgcggtttgcgtgaaacagtgatttttgctgaccgcctcttgcagtctggtttccgcttg
gcgactaacgccggtatctcggttgcgatcgacgatatgctgattccaacttctaaagag
cgcatcatcactgaggcttctgccaaggttaaagagtacgacaagcagttcatgtcaggt
ctcgtaaccaatcaagagcgttataacaacgtggttgatatttggggtgccgctggtgac
caagttggtaaagcgatgatggatgagttgtcacacgttgacgtactcgaccgtaacggt
aaaactgtgcgtcaagaatctttcaactccatctacatgatggcggattctggtgcgcgt
ggatctgcagcgcagattcgtcagttggctggtatgcgtggtttgatggcgaagcctgat
ggctccattattgaaactccaattactgcgaacttccgtgaaggtttgaacgtgttgcag
tacttcatctcaacccacggtgctcgtaaaggtctggccgatacagcgttgaaaacagcg
aactctggttacttgacacgtcgtttatgcgacgtaactcaagacctcgtggttattgaa
gaagattgcggcgcaacttctggcgtaacgatgaaagcgcttgttgaaggcggcgagatt
atcgaagcattgcgtgatcgtattttgggtcgtgtatgtatcggtgacatcgttcaccct
gatacacaagaagtgattgttcctaacgacacattgctcgatgaagatcacgttgatcaa
atcgtggcattgggtatcgacgaagttaaagttcgcacagtattgtcttgcttaactcgc
tttggcttgtgcgctaagtgctacggacgtgatctaggtcgcggtggtttggtgaacgtt
ggtgaggcggttggtgttatcgctgctcagtcgatcggtgagccaggtacacagttgact
atgcgtaccttccacatcggtggtgcagcgtcacgcgctttagttgcaagcaatattgaa
gctaaatcaaatggtgcattgaagttctccggcacgatgcgtgttgtgaagaacgcgaag
ggtgaacagatcgtgatttcacgttctggcgaagccttgatcgttgatgagaatggtcgc
gagcgcgagcgtcataaagttccttacggcgcaactctcttgttgaaagaagatgcagca
gttaaggctggcgcaagcttagcaacctgggatccattaacacgtccgattatttctgag
tacgctggtatcgctcgcttcgacaacgttgaagaaggtgtaactgttgctaagcaggtt
gacgaggttaccggtctatccactttggtggtgattgatggtaagcgtcgttcagcagca
agcaaaggcgttcgcccaatgatcaacttggttgatgaaaagggtaatgaagtcatgatc
gccggtactgatcatccagtaaacattggcctccaggtaggcgctttgattactgttaag
gatggtcagaaagttgaagtcggtgaagtattggcacgtattccaatcgaatcacagaag
actcgcgacattactggtggtttgccacgcgttgcagaattgttcgaagcgcgttcacca
aaagatgcagctgtattggcgaaagttactggaacagtttccttcggcaaagaaaccaaa
ggtaaacagcgtttggtgattaccgatatggacggtgaagccaatgaattcttgattcct
aaagagaagcaagttctcgttcacgacggccaagttgtgaacaagggcgagatgattgtg
gaaggccctgctgatccacacgacatcttgactctcaaaggtatcgaagagttggcaatc
tacatcgttgacgaagttcaagacgtttaccgtctccagggtgtgaagatcaatgacaag
cacattgaagttatcgtgcgtcagatgttgcgtcgtgttcaggtaactgatccaggcgac
acatcattcatcactggtgagcaagttgagcgttctaagttgtatgacgctaacgatgca
gtgatcgcccaaggcaagcacccagctcagttcgataacgtgttgctaggtattactaag
gcatccttgtcgaccgacagcttcatttcagcggcttctttccaagaaaccacccgtgta
ttgaccgaagccgcaattatgggcaagaccgatacactccgtggcctcaaggaaaacgtc
attattggtcgtctgatccctgctggtaccggcttgtcttatcgccgtgcacgcaaggtc
agagagcaattcgagcgtgaccgcgctcaaatgattgccgccgaagaggaagcaatggcc
aatatgcctgtagaaatcgaggctgaagtcgttgctcctactggggaggctgatccaagc
taa |
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