KEGG   Polynucleobacter yangtzensis: PKF023_02800
Entry
PKF023_02800      CDS       T08788                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
pyt  Polynucleobacter yangtzensis
Pathway
pyt00740  Riboflavin metabolism
pyt01100  Metabolic pathways
pyt01110  Biosynthesis of secondary metabolites
pyt01240  Biosynthesis of cofactors
pyt02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:pyt00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    PKF023_02800 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PKF023_02800 (ribD)
Enzymes [BR:pyt01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     PKF023_02800 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     PKF023_02800 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD
Other DBs
NCBI-ProteinID: BDT76477
UniProt: A0A9C7CKZ4
LinkDB
Position
274645..275760
AA seq 371 aa
MYSAVDHQMMGEALAQAQKALYLSNPNPRVGCIIAKDGKVIGRGFTQAVGKAHAEVQALA
DAKAQGNDVVGSTIYVTLEPCSHTGRTPPCVDALLAAKPAKVIVAMSDPNPLVAGKGLEK
LRAAGIEVQCGLLEPEAQSLNRGFISRMTRGLPWVRMKIAASLDGKTALPDGRSQWITGP
LARADGHHWRAQACAIVTGVGTVKEDDPSLNVREVETQRQPMRIIIDSKLETPQTAKILQ
NPELSGVLIVCANLDTPEIQAKVQNFEARGIQVIAMANAFGKVDLPSLFSYLAKEHEMNE
IHVESGFKLNGSMLREDCVDELLLYYAPFLMGEGIGMANVGPFNELSQRQNWQVIDQSLF
GPDLRLRLIKN
NT seq 1116 nt   +upstreamnt  +downstreamnt
atgtacagcgcagttgaccaccaaatgatgggcgaggctttggcccaagctcaaaaagca
ctttatctatccaatccgaatccgcgggtcggttgcatcattgcaaaagatgggaaggtg
attgggcgaggctttactcaagcagtcggaaaggcgcatgcagaagtgcaagcgctggca
gatgccaaagcccagggtaacgatgttgtaggctcaacaatctatgtgaccttagagcca
tgtagtcatacaggtagaacacctccttgtgtggatgctttactagcggctaagccagca
aaagtgattgtggcgatgtctgatcccaatccgcttgtagccggtaaaggtttggaaaag
ctaagagctgccggcattgaagtgcaatgcggtttgctagagccagaagcgcaatcactc
aatcgtggattcatttctagaatgacacgtggcttgccatgggtgcgcatgaaaattgcg
gctagtctagatggcaaaactgctttgcccgatggtcgtagtcaatggattacaggccca
cttgctcgtgctgatggtcatcactggcgcgcacaagcatgcgccatcgttacaggtgtt
ggtacagtaaaagaagatgatcctagtttgaacgtgagagaggttgagactcaaagacaa
ccgatgcgaatcattattgattccaaattagaaactccacaaacagctaagattttgcaa
aacccagagctatctggtgtcttgatcgtatgtgcaaatctagatacccctgagatacaa
gcaaaggtccagaattttgaggcgcgtggcattcaagtgatcgcaatggctaatgcattt
ggtaaggtggatttgccgagcctattctcctatctcgccaaagagcatgagatgaatgaa
atccatgttgaatctggctttaagctcaatggctcaatgctcagagaagattgtgtggat
gagctgttgctctattacgcgccattcctaatgggcgagggcattggcatggctaatgtt
ggcccattcaatgaattaagtcagcgccagaactggcaggtcatagatcaaagccttttt
ggccctgatctgcgcttacgtttgattaagaactaa

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