Polynucleobacter yangtzensis: PKF023_04140
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Entry
PKF023_04140 CDS
T08788
Symbol
icd2
Name
(GenBank) isocitrate dehydrogenase, NADP-dependent
KO
K00031
isocitrate dehydrogenase [EC:
1.1.1.42
]
Organism
pyt
Polynucleobacter yangtzensis
Pathway
pyt00020
Citrate cycle (TCA cycle)
pyt00480
Glutathione metabolism
pyt00720
Other carbon fixation pathways
pyt01100
Metabolic pathways
pyt01110
Biosynthesis of secondary metabolites
pyt01120
Microbial metabolism in diverse environments
pyt01200
Carbon metabolism
pyt01210
2-Oxocarboxylic acid metabolism
pyt01230
Biosynthesis of amino acids
pyt04146
Peroxisome
Module
pyt_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pyt_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Brite
KEGG Orthology (KO) [BR:
pyt00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
PKF023_04140 (icd2)
09102 Energy metabolism
00720 Other carbon fixation pathways
PKF023_04140 (icd2)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
PKF023_04140 (icd2)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
PKF023_04140 (icd2)
Enzymes [BR:
pyt01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.42 isocitrate dehydrogenase (NADP+)
PKF023_04140 (icd2)
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Gene cluster
GFIT
Motif
Pfam:
IDH
DUF4435
Motif
Other DBs
NCBI-ProteinID:
BDT76611
UniProt:
A0A9C7C9C1
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All DBs
Position
401222..403456
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AA seq
744 aa
AA seq
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MASEKSKIIYTLTDEAPLLATCAFLPIIRTFTAPAGVEIVTSDISVAARILAEFSDCLTP
EQQVPDNLAALGKMTLLPDTNIIKLPNISASVPQLLAAIKELQAKGYKIPNFPEDPKTDE
EKSIRTRYSKCLGSSVNPVLREGNSDRRAPPAVKRYARKNPHSMGEWSQASRTHVSHMHG
GDFYSSEKSMTMTKACDVKMDLVTKSGKTIVLKPKVSLLAGEIIDSMYMSKKALCEFYEK
EIEDAYKTGMMLSLHVKATMMKVSHPIVFGHAVKIFYKDAFTKHAKLFEELGVNANNGMS
SLYEKIKTLPESKREEIIQDLHACHEHRPALAMVDSAKGITNLHSPSDVIVDASMPAMIR
VGGKMWGADGRLHDTKAVIPESTFARIYQEMINFCKTHGNFDPTTMGTVPNVGLMAQQAE
EYGSHDKTFEIPEAGIARIVADDGTVLLEQTVEEGDIWRMCQVKDAPIRDWVKLAVNRAR
LSNTPAVFWLDEYRPHEAELIKKVNTYLKDYDLTGVDIQIMSQTRAMRYTLERVIRGKDT
ISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQLVEENH
LRWDSLGEFLALAVSLEDIGDKTGNNKVKILARTLDEATGKLLDNNKSPSPRTGELDNRG
SQFYLAMYWAEALAAQTEDKELQAFFAPLAKSLIENEQKIADELKAVQGKPVDIGGYFVA
DSEKCKAVMRPSPTFNAALKAARG
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagagaaatcaaagattatttatacgctgacagacgaggcgccacttttggcg
acttgcgcatttctgccaattattcgtacttttacggcacctgctggcgtagagattgtg
acgagcgacatttctgttgctgctcgtatcttggctgagttttctgattgcctgactcct
gagcaacaagttcctgataacttggccgcgctcggcaaaatgactttattgcctgacacg
aacatcattaagttgccaaacattagtgcttcagttcctcagttgctcgcagctattaaa
gagttgcaagcaaaaggctacaagatccctaattttcctgaagatccaaaaacggatgaa
gaaaaatctatccgtactcgctattccaaatgtttaggtagctcagttaacccagtattg
cgcgaaggtaactcagaccgccgtgcgccacccgcagtaaaacgctacgcacgtaaaaac
ccacattctatgggtgagtggagccaagcttcccgtacgcacgtctctcatatgcatggc
ggcgacttctactctagcgagaagtcaatgaccatgactaaagcttgcgatgtgaagatg
gacttggtgaccaagagcggtaagacaatcgtcctcaagccaaaggtctcattattagct
ggcgaaatcatcgacagcatgtacatgagcaaaaaagcgctatgtgagttctacgagaaa
gaaatcgaagacgcttacaagaccggcatgatgttgtccttgcacgttaaggccacgatg
atgaaggtttcacacccgatcgtattcggtcacgctgtgaagattttctacaaagacgcc
tttactaaacacgctaagttgtttgaagagttgggcgtgaatgccaataacggcatgagc
agcttgtacgaaaagattaaaactttgccagaatctaagcgcgaagaaattattcaagac
ttacacgcttgccacgaacatcgcccagcattggcgatggttgattctgctaaaggcatt
accaacttgcattccccaagcgatgtgatcgtggatgcttctatgcctgccatgattcgt
gttggcggcaagatgtggggcgcggatggtcgtttgcatgacaccaaagcggttatccca
gaaagtacctttgcccgcatctatcaagaaatgattaatttctgtaagacacacggtaac
tttgatccaactaccatgggtactgttccaaacgtgggcttgatggctcaacaagccgaa
gagtacggttcacatgacaagacctttgaaattccagaggctggtatagctcgtatcgtt
gctgatgatggcactgtattactcgagcaaactgtagaagagggtgatatctggcgtatg
tgtcaggttaaagatgccccaattcgtgactgggtcaagttggctgttaatcgtgcacgt
ctttctaatactccagcagtattctggcttgatgagtaccgcccacatgaagctgagttg
atcaagaaggtaaatacttaccttaaagattacgatctcacaggcgttgatattcagatc
atgtcccagactcgtgcaatgcgttacaccttagagcgtgtgattcgtggcaaggacact
atttctgtgacaggtaatattttgcgtgactacctcacggacttgttcccgattatggaa
ttgggtaccagcgcaaagatgttgtctatcgttcctttgatggccggtggcggcttgttc
gaaactggtgcaggtggttctgctccaaagcacgttcaacagttggtagaagaaaatcat
ttgcgttgggattcacttggtgagttcttggctctagcggtatctcttgaagatatcggc
gataagacaggtaacaacaaagtgaaaattctggcacgtacattagatgaagccactggc
aaattgttggacaacaacaagtcaccttcaccacgtactggtgagttggataaccgtggc
agtcagttctacttggcaatgtactgggctgaggctttggccgctcaaactgaagacaaa
gaattgcaagctttctttgcgcctctggctaaatcattgattgagaacgagcaaaagatt
gcagatgagctcaaggctgttcaaggcaagccagtagatatcggtggttactttgtggcg
gattccgagaagtgcaaggctgtaatgcgcccaagtccaactttcaatgcagccctcaag
gcagcaagaggttaa
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